RNA id: XM_026911882.2


Basic Information

Item Value
RNA id XM_026911882.2
length 940
RNA type mRNA
GC content 0.55
exon number 5
gene id hmgb2b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25043358 ~ 25046146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGTACGTCTAGCCAATGGAAGCGGAgtaagtgggcggggcttgtgtGCTACAGTATCTACGCAGAAGAACATAAACAGTAGCGGAGTGCAGACGGAGTGAGACTGCagcagCCATGGTGAAAGATGTGAATAAGCCGAAAGGCCGGACCTCAGCGTACGCCTTCTTCGTTCTCTCCTGTCGGGAAGAGCACAAGAAGAAGAGTCCTGGTACCACGGTGAACTTCACCAAGTTCTCCAAGACCTGCTCTGAGCggtggaagactCTGGCTGCGACTGAGAAGAAGAAGTTTGAAGACCTGGCGAAGGCCGATAAGGACCGCTACGATCGGGAGATGAAGAACTACATCCCTCCGAAAGGCATGGggaagaaggagaggaagaagaaggacCCCAACGCTCCCAAACGCCCCCCGTCAGCGTTCTTCGTCTTCTGCTCGGAGCACAGGCCGACGGTGAAGGGCGAGTACCCCAGCCTGTCCATCGGAGACATCGCCAAGAAGCTGGCTGAGATGTGGGCCAAACAGAGCCCTAAAGACCGCACGCCCTACGAGCAGAAAGCAGCCGCTCTGCGCCAGAAATACGAGAAGGACATCGCTGCGTACCGCGCTAAGGGCGGGGCAGGGGGCGGAGCTCCTAAACGAGGCCCTGGCCGACCCACAGGCTCCGCTAAGAAAGCTATGGTTgatgcagatgatgatgatgatgaggaggatgaagatgaagatgaggaagaagacgacgaggaggaagatgaggatgacgagtagagtgtgtgtgtgtgtgtgtcacggcTGCTGCATCTATGCAGGATCACTTCACTGCGGTTTGGGGGTTTtaacgtgtgtgcgtgtgtcagagaatatgtgtgtgtgtcagagtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgttagcgtgaGACCAGCCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308821 lncRNA upstream 14397 24970399 ~ 25028961 (+) False G260779
TU308820 lncRNA upstream 15565 24970399 ~ 25027793 (+) True G260779
TU308764 lncRNA upstream 20804 24864162 ~ 25022554 (+) True G260736
TU308838 lncRNA upstream 26419 25015220 ~ 25016939 (+) True G260796
TU308839 lncRNA upstream 26419 25015220 ~ 25016939 (+) False G260796
TU308862 lncRNA downstream 1405 25047551 ~ 25053519 (+) True G260812
TU308864 lncRNA downstream 9002 25055148 ~ 25060232 (+) True G260813
XM_034312226.1 mRNA upstream 30087 25011096 ~ 25013271 (+) True LOC117599307
XM_034311594.1 mRNA upstream 35541 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA upstream 35541 25002010 ~ 25007817 (+) False LOC113525303
XM_034312118.1 mRNA upstream 161718 24870669 ~ 24881640 (+) True zgc:56304
XM_034311620.1 mRNA upstream 174526 24856580 ~ 24868832 (+) True txk
XM_034312013.1 mRNA downstream 23769 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 408813 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 774091 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 1010634 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1654044 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1659705 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile