RNA id: XM_034311542.1


Basic Information

Item Value
RNA id XM_034311542.1
length 3658
RNA type mRNA
GC content 0.45
exon number 11
gene id camkvl
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10497718 ~ 10529717 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attatttatttctcaGCGCGGGCGGGAGGCTCAGAGGCGTCGCGCGCTCATAGGCGTGTCAAATCGCGAGCATCTTCCCGCACTAGCTTCAGCGTTTCAGCTCTCGGTAAGCTATAAAACTACGAGAGAGAAACAAGACGGGATTGTAGGACTGTCGTCAAAGTTTGCTTTGGCTCCTGAAAGCAGTGAACGGCGCTCTGTGTTCATCCAGCATCAGCGAGCGGAGCAGATGCTGTCATGCCATTTGGGTGCCTTGCCCTACGAGATGGGAGGACGTACCACAGCCTGTCAGACATCACAGATAAATATGAGATCGGGCAGGTCCTAAAGGCGAAGGAGTTTTGTGAGCTGTGCCTGGTAAAGGAACGTCAGACAGACAAGGTCTATGTGTGCAAGAAATTCCTCAAGAAAGATGGCAAAAAAGTGCGGAAGGCTGCCAAGAATGAGATCATGATCCTGAAAATGGTCAACCACCCAAACATTCTGAAGCTGATAGATGCGTTTGAGACCAGGAAAGAGTTTTACATCATCCAAGAACTGGCCACAGGTGGGGATGTGTTTGATTGGATCCTGGATCAAGGGaactacacagagagagatgctgCCAACGTAATCCGTCAGGTCCTAGAGGCAGTGGCTTACCTTCACTCCCTCAACATAGTTCACAGGAACTTAAAGctGGAGAATTTGATGTACTACACAGAGAATAACCACAATAAAGTAGTCCTTCGTGATTTCTATCTCTCCCGGTTTGAGAACGGCTCCATCACCGAACCCTGTGGAACGCCGGAGTATCTGGcCCCGGAAGTGGTGGCTCGACATCGGTATGGAAGGCCCGTGGATTGCTGGGCCATTGGGGTCATCATGTACATGCTGCTGTCGGGAAATCCTCCCTTCTATGATGAGACAGAAGAGGagaacacagacatgcacaatCGCATTATCTTCTGCCGGATTGTTGCTGGAGACTATGAGTTTGACTCGCCTTACTGGGATGACATATCACCTGCAGCTAAAGAGTTGGTGTGTAGGCTGATGGAGGTTGACCAGATGCTACGAATTACAGCACAAGATGCCTTGTGGCACGAGTGGATTGCTGGAAATGGAGCCTCAGAAAAAAACCTGAAGGCTGGAGTGTGTGCACAGTTCGAGAAGAACTTTGCAAAAGCCAAGTGGAGGAAAGCGATTAGAGTCACTACATTTATGCAGCGTCTTCGGGCCTCAGAGATGGGCTCTACAGAAGTGGcaacagagggacagaggggtGTCCAGGCTGATGGAGGAGGAAGTGAAGGAGTCCCCACTGACTCAGGGGGAGGTTCATCTGTGAGCATGTCCAATGAGATGATGGTGGAAAACACACCAGTTGAGGATCAAGTGAGAAAAGTGCAAGAGGAGCAAGATACACTAGTTACAAATTCACTCTCTGACATGTCAAAGTCACTGGCACAAACAGACTCCTCAACCCAGACACAAGTGGAGGAGCAGGGCAAGGTGGTTGAGAAGAAGACGAATGTAGATGGCTCTCAGAAAAGGGCAGCTGTTTTGGAGCaagaaaaaacagaggcatgCCAGGAACCCACCTCCAGTATATACACGAAATCCTCTGACTGCCAAAGAAACAAATTTTCCCCAGAGAAAGAAGCCACAGACAAGAAAGTAACACCTGATACCCCAAACCGCCGCAGAATGGCTGCTAACTTGTCTCTGGATCATGGGTTAGGGCATGGGCCCAAGACTAGCAGTCCAGCTGTTGAGAAGAAACAGGCAGTAGCAAATGAGGAGAAGGTAGAGGCAGCAGGTAAGCAGGAAAATTCCCCTGGTAGCTGGTGTCAGACTCAGCTTCCAGAGATGGTAGCAGAGGGGCAGGTAGGTGCTGGGACTATAGGAGAGAGTAGTCCCGGAggcagagagagggaagaaggCAGAAGAGACAAGTCAGGAAGGCATGCGCACAGTTTGTATGCTGGTACAGATTCTTCAAGTTTGGGTCGTAAGAAGACTGTGTATGTGCAAGAACAGAGAGATACAAGCCATGGTGCTGCTTGTAGGAATCCATATTGTTCTCCTTACTCTTTTAGCGGTGGGGCAGCATACGATGATTTACAAGGAGGGGATGCCAATGCTGACTGGCAAATGGACAGCGTGATTGAACAGATAGAAAAGCAAATGGCGGCTGTACTTGAGAAGATTGAAGGCGATATGCCGTCCTTACTGGAGCAGATCAAGGACTGTCCTGAGAGTTTGCCAAGAGCAAAAAGCGCTCACTCTTCTCCTTCATTTCATCATCGTTCCTACCAAGATCGTTCTACTCCACCACCTCTTCCTACCACCCCACGGCCACCCGTGCCCTCTCTACCACACCTCACCATTCCCCCGCCCGCCTACCCACCTCCAAACCCACCCATTCAAACCCAAAGTCACAACCAACTGGCCACTGAGCAGGATGAGCAAGACGGACAAAGGGGTACTGCAAGACTGAGCCAGTCACCGAGAGGAGGGCTGTCAGGCAGAGGTTTATGAAGCTTATGTGAGCAAAAGTAAATTGTAAGGGAAACTAAGATCAAATCTAAGAACAAgtcatggagaacatggagagcAAGTCAAAGTAGCAGATTTGACTGtacaaagatttttaaaatgtaaattatagaGTAGCTTTGCTCCTCTTTGCTTGTAGTTAAGAAGAGTCATGACCAGCTGCATTTGTCCAGAAGATGGTTTCTAGCAGAAAAGCACAATTACATGCTCGAGGCTTTGGGGACTGTTATGAACACAAAATTATAGAGTAATATCCCCGTATGTGCATTTTCAGACATAGCTTATATACACCACATAACAATGGAATGTGAGATGAGACTCCTGCCTGAAATACCTGTAAATATGTCTATTTGGCATTATAATATTTTAGAGAGCACTCATATTTTCCATGAGTAATTTCATAACCATAATCCAGTAGTCTTTGTCTAAGCAAAGAAGAAAGGGTGTTTAGCTTGTGCACAACACTCTTTTAGACATGTACAGTGTAGAATAAAGTTCAGCCTAAAAGAAAACGTGGGCATATATtcttaataatgttaatggtcaTTGTTTATATGAGTTCCTTTAGCTATAATAGTTGGGTTAGTGCACCACTGCTATCAGCTGCcattcatgcacacatacagcacaTTGGGGCAACAGCCTGGGAAGAATACTATTTTCGAGAACTAGTTTCAGGAATACATGTTTGCAATATCAACTGAAGAAGCTACGTTCATTTATTCTTATTCTGTACAGTTCATCCTGTACATACTGTTTCTGCATGTCTTTCTAATCTAAGTTTATGTTTGTCCTAATTGATAGTAACTTAGGGAGGCTAACCAGACATTTCCCTTCTCCTGATTGACTGATTGTGATATTTCTTCCTCCTACATGTGGACGatgatttctttctctcttttgttattacatatatattaccaATTTTATCAAATGTATAGTTATTAAAAACACCttcccaaaatgtaaaaaattttgacatttacaaatgtaacaGCCTTACTTCTGTGCTCTGGTTCCtcttttcaaatattttgtcATAGTGATGTGAATATTCTTCCAAAGTACTTTTGCACTCTCTCTGCAAAGATTTCAATAAAATCTAGATGGTATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 100978 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 209034 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 125597 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 180678 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 249268 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 252418 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 335643 10865360 ~ 10865700 (-) True G252920
XM_026920773.2 mRNA downstream 1591 10480490 ~ 10496127 (-) False uba1
XM_026920772.2 mRNA downstream 4136 10480490 ~ 10493582 (-) True uba1
XM_034311853.1 mRNA downstream 4137 10480490 ~ 10493581 (-) False uba1
XM_026920976.2 mRNA downstream 17854 10470499 ~ 10479864 (-) True arhgef3l
XM_026920979.2 mRNA downstream 27922 10460694 ~ 10469796 (-) False usp21
XM_026920842.2 mRNA upstream 18673 10548390 ~ 10561471 (-) False adnpb
XM_026920843.2 mRNA upstream 18673 10548390 ~ 10561262 (-) True adnpb
XM_026920247.2 mRNA upstream 32607 10562324 ~ 10568759 (-) True dpm1
XM_034311722.1 mRNA upstream 40392 10570109 ~ 10617516 (-) True LOC113530527
XM_034311721.1 mRNA upstream 40392 10570109 ~ 10605288 (-) False LOC113530527
XR_003403171.2 other downstream 28184 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 467725 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1919118 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2987971 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4189955 6304844 ~ 6307763 (-) False rps26
TU299234 other upstream 106806 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 484247 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 729326 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 743613 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 926304 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile