RNA id: XM_026920078.2


Basic Information

Item Value
RNA id XM_026920078.2
length 4244
RNA type mRNA
GC content 0.51
exon number 22
gene id scube3
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22859162 ~ 22951930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctccgctccCTCTCTCCCATACAAACGGCTCGGAGGCGATCATGAGCAGTGACGCGCGCTCCTGTGCTCGCGCTGAACGCGGTGGTCGCTCCTCTTTCGCGAGCCGGACGCTATAACGGAGAGGATCCACGCGCAGGGAATAACGGCCACGCTTGCACGCACGAGCGTCCCTGAGCCTGAACTCCAAACTCAGACCCGGGATAAAAGTCTGgtccttcttcctcttcctcttcctcttcatcgGTCTCCTGGTTCTCCGCGCGCGCTGAGATGTTCCTCCAGGCGGTAGCGCGCGCCTGCGCCGGATTGGTGGCCTGCACCCTGCTCGCCTTTGTCCCGCAGCCGGCCACCGCATCCCTCAGCCGATCTGCACACGatgTGGACGAGTGCGTGGAGACGACGGACAACTGCAGCATTGACGCTATCTGCCAGAACACATTCAGATCGTACAAATGCATCTGCAAGTCCGGTTATAAAGGAGACGGAAAGCACTGTGAAGACATCGACGAGTGTGCAAGCGAATATAACGGAGGATGCGTCCACGAGTGCATCAACATCCCAGGAAACTACCGGTGCACGTGCTACGACGGCTTCCGCCTAGCACACGACGGCCATAACTGCCTGGatgTAGACGAGTGTTCGGAGGGTAATGGTGGCTgtcagcaggtgtgtgtgaacatgatgGGAAGTTATGAGTGTCGCTGTAAAGAGGGCTTCTTTCTGTCTGACAACCAGCACACCTGCATCCAGCGGCCCAAAGtGCGTATGAATGGGACAAAGGAAGGCCCCACTTGTATGGACAAAAACCACGGCTGTGCACATATCTGCAGGGAAACTCCAAAAGGAGGCATCGCCTGCGAGTGCAGACCGGGCTTCCAACTCACCAAGAACAACCGTGACTGCAAGTTGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAGACAGACCATGGGCCGCGCTGTTCTTGCCACATAAAGTTCGCCCTGCACTCTGATAGCAAGACATGTGTAGAGACGTGTGCGGTGAATAATGGAGGATGTGACAGCACGTGTCACGATGCTCTAACAGGGGTGCGCTGCAGCTGTCCGGTCGGATTCACTCTTCAGCCTGACCGCAAGACCTGCAAAGATATCGATGAGTGCCGCATGAGTAATGGCAGCTGTGATCAGATTTGCCGGAACACAGTGGGAAGCTTCGAGTGTAGCTGCAGGAAGGGTTACAAGCTGCTCACCAATGAGAGGACCTGTCAAGaCATAGATGAGTGCTCGTTTGACCGCGCGTGTGACCACACCTGTGTGAACTCTCCAGGCAGTTTTGAGTGTCAGTGTCACAAAGGCTATGTCCTGTATGGAGTCGCTCACTGTGGAGACATCGATGAGTGCAGTATAAACCGTGGCGGCTGTAAGTATGGCTGTGTGAACACGTTGGGCAGCTACGAGTGTACATGCCCACCTGGATACAAACTGCACTGGAACAAGAAGGACTGTGTCGAGGTCATTAAGTGTCCATCCAGCCTGGTGGCGCCAAAAGCAACGCTCTCTTGCAGCAAGACAGGCAAAAAGGAGAGTTGTTCACTGACCTGTGCATCCAAGGCACACTATCTGGCAGAGTCCGACAACAGTTACACAGTCAGCTGCGGCGTCCGAGGAAAAAGCCAAAGTAGACTGAACTCCAGCAACAGCCAGAGCTGCATAGAGACTTTGGCTTCTCCAGTGAAGCAGACGGCATCGTTCCGAATCAAGAACGCCAAATGCCACCTGCACCCCAAACTCAAGGGACGAGCAGAAGATGGAGGCAAGCAGATTGGTCCAGGTGGTCAGCTCTGCAACAACTGCCAAGTCACCTTCGTCAATCTGAAGTGCGAGTCCTCCAAGAAGACCAAAATTCGCCACACACGTAACCCGTCTAATAAAGAGGTCACACGCATCACGCTGGAACTAGAAGCAGAGATAAAGCCTGGAGACACTACCGGGAGCTGTGACCTGAGCTGTGTGAGGAAACAAATGGAGCAGAAGATGAAGTCTTCCATCAAGGCACTGAAGAAGTCCATCAACCAGGAGAGGTTCCTCATCCGTGTGGCTGGTCTTGAGTATGAGGTCGCTCAGAAGGTTACACAATCCGCTGATAAACAGGAACACTGCGGCCCcgggagagagagggacagcGGCCGATGTGTCAGATGTTTGCCTGGTTCTTATTATCACGGCGAGATGGAGCGCTGTGTGCAGTGTCCACCCGGAACCTTCCAGGAGCGTGAGGGTCAACTGGCCTGTGACCTTTGCCCTGGAGAAGATCGCCATGGCTTGCCAGGCGCCCGTAACATCACTTCCTGCTCAGGTCAGTGTGCACCAGGATATTACTCCAGTGACGGCTTTAAACCGTGCCAACTGTGCCCTCGGGGCACATACCAGCCTGACCACGGAAGAACACTTTGCTTCCCTTGTGGAGGTGGCCTCgaaacaaagagagagggatCCAGCTCCTTCCATGACtgtgaggtcaaagTGTCTTGTCCTCCAGGCCATTACTACAACACCTCTGTGCATCGGTGTATCCGGTGTCCCGTGGGAACATATCAAACAGACTTCAAACAGAATTACTGCATCTCATGTCCTGGAAACACCACCACAGACTTTGATGGTGCAAccagtgtgtctcagtgcaaGAaCAGGGAATGCGGCGGTGAAATCGGAGAATATATTGGCTACATTGAGTCTCCGAACTACCCAGGAGATTATCCTGCTAACGTGGACTGCACCTGGACCATCAACCCCCCCAGCAAGCGCAAAATCCTCATCGTCGTTCCAGAGATCTTCCTCCCTTCTGAAGATGACTGTGGAGATGTGCTGGTGATGAGAAAGAACTGGTCAGTGACCTCCATAACCACGTATGAGACGTGTCAGACATACGAGCGGCCCATCGCCTTCACGGCTCGATCACGGCGCCTCTGGATCAATTTCAAATCCAACGACGTGAACAGTGCACGCGGCTTCCACATCCCTTACGTCACATATGATGAGGACTATGAGCAGCTGGTGGAAGACATCGTGAGAGATGGAAGACTTTATGCTTCAGAAAACCATCAAGAAATCCTGAAGGACAAAAAATTAATCAAGACGCTCTTTGACGTCCTGGCGCACCCGAATAACTACTACAAGTACACGGCTCGGGATTCCAACGAGATGCTGCCGCGCTCCTTCATCCGGCTTATCAGCAGCAAAGTCTCGGCCTTCCTTCGACCGTACAAGTAGCCGCTAACGCTCAGAGGCTTTACGCACTCCGGCCGACTCTGACAGCAGGCTTCAGTCTAAAGGATTCAGCACAcgctttgtttaaaaaaatccaaccaGGCTTTTGACTTTTACTCGCTTCACTATGCACATTTGGTTTTGAATTtctgtgctgtttatttttatcaatCCTTTCTGATAAGAAGAGGGCGATTAGGTGAATAATTGCATCATACATTTGCAGCATATGAGGGTTTTTTGCGCTTTTAGGTCCTGTCTTCATCACCATTCTGTATTGTGTTGATGTTTGTCTGGAATATATCAGAATATACAATGTAGAAGGTGTAATATTCCAGTGAGCACCATAATTATTgggacagttttttttcctgtgggcTGATTTTAAGTGTCATGCCTTGATCTGGCCCCTAAATAAGGCCTTTTTTTTGGTCCACATGAAGTTTGACATCTTGTATGTGACCAGAACAATCCCTAAAATGCATTCTGAATGTCTGTCTCATGCAGTTTAAGCATCTGTGCGCTCACTGGGATATCGCACATTTGGGTAGAGTTGCAAAGTTGACAGAAGGTGCGTCATTTTGTCAATAAGCAAGATGTGAGCTTCTGATTTACTTCGCAGTTTTCTGTAGCACCTCGCTATAGCGTTTGTATATCCATtgtatttctgtcttttccATGCTCTCATCCCCCTTTACTTCATATCATACGTTCCGTGTCATCATAGTTCAGCTCTTAGAGCATCTTTAGTCTTCCTGCCACGCTGTTAAAACAGTACATTCCTGTCTGTCGACGTTGTATTACTAGTTTTCGGTTTCATATTCGTTTACGACCATATATTGGAGTTAATTTAACGAGGCGTAGAACACGTAGTGCATTATTACGAGACTGAAACGGAAGAGTTGCGGTGAGAAACAGTGTTTAGTGAGCAGTTCTGCAGAGAACGAGGCTGagatgcgttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307196 lncRNA upstream 17423 22839217 ~ 22841739 (+) True G259498
TU307080 lncRNA upstream 273353 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 356257 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 378062 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 628482 22227964 ~ 22230680 (+) True LOC117599300
TU307249 lncRNA downstream 61454 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 70040 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 74516 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 325504 23277434 ~ 23277909 (+) True G259690
TU307732 lncRNA downstream 355825 23307755 ~ 23308592 (+) True G259962
XM_026921402.2 mRNA upstream 7734 22834522 ~ 22851428 (+) False LOC113530963
XM_026920419.2 mRNA downstream 54636 23006566 ~ 23011461 (+) True myl9a
XM_026921398.2 mRNA downstream 200674 23152604 ~ 23171751 (+) True si:dkey-65j6.2
XM_034311676.1 mRNA downstream 220327 23172257 ~ 23179323 (+) False tgm2a
XM_034311677.1 mRNA downstream 220911 23172841 ~ 23179323 (+) True tgm2a
XM_026921432.2 mRNA downstream 234561 23186491 ~ 23195255 (+) True tti1
XR_004579671.1 other upstream 179612 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 547274 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1316908 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1628291 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 1954089 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 419817 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 419817 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 435608 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1080297 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1316647 24268577 ~ 24269267 (+) True G260483

Expression Profile