RNA id: XM_026920085.2


Basic Information

Item Value
RNA id XM_026920085.2
length 1989
RNA type mRNA
GC content 0.51
exon number 9
gene id si:rp71-79p20.2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15187398 ~ 15257751 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGACGTTGGTTCGGGCAGGGAGAAAAGCAAAACAATCGTTTGAGCTATTCCCTTTACCGGCTGTATTTTGGGTTGTTTTAGACTGGTAGTACTATTTAGTGCCTCCGCCGAAATAACTGGGCTTTGTAGTCAGCAgagtcattttaaatgtatctttCCTTGTTAGGCTGTAGAATCTGCCGACATCTTATCCTTCTTTAGATGCACTTGGCCTGTTTGAAAATGACTTCGAAGCGCCTCCTCGATAAGAACCCAGCCGGCGTGAGAGGGAGCGGCGCCGGTAGCATCGGGTATGCGGGAAACTACTGCACTAAACACAGCGAGCATTTTGCAGCGAAGACAGGCGGAGTCATCACCAGAAAGAAATCACCCGTAACGGTAAACGGGATTGACACCCAAATAGTGGATACGTGCTCCCTGCAAGAGCCTAGCAAAGAAACGTGTCCTAGTGGAAACCAGTTGGCTTCAGGTCGAGAGAAGCACTACACCAAAAAAAAGaccATCTATGCAAGTGAGGAGGATCAGAGGGAGGTGGGTCCAGGAGAGGTCCTGAAGTGCAGAAGTTTTACTCATCGCTTGATCCTGAATGGACAAAGGCAAGAGGACCACATGCAAGTGGAGTCCATAATTTCATTAAGGAGCATGTTGCcactgtgtgttacagatgtttCAGCAGAGGAGATCTATGCATCCTCTCATATCCCTGTCCCTCGCAACAGGAAGCCCTCAGGCCATGCTGATAAGGAGGTGATGGCAGCTACTGTCTTGACCACTCTGTCCACAAGCCCTCTGGTGCTCAACCCTTCCTCTGGTGCCTCAGGTGGAGTATCGGAGACATCCAGCAGGGGATGGAAGGAGAGTCTGTCAGCCAGCTACAGCAGCTCCACCAGTGGAAACTGGAGCTGGGATGCCAGCGACCAGTCAGTGCCCAGCACACCATCCCCACCCCTCTCCAATGATGTCAACAAGAGCTTCCTGATCTACTCACAGGGAGAGGACAACATTGAGGAGGCAGAGAGcacccacttcctgtttgaggACCCTATTCCCCGGAAACGTAAGAACTCGATGAAGGTGATGTTCAAATGTTTGTGGAAGAACTGTGAAAAGGTCCTTAGTACTTCCTCAGGGATCCAGCGGCACATCCGCACCATACACCTGGGgCGGAATGGAGATTCTGACTACAGTGATGGTGAGGAGGACTTCTACTACTCAGAGATTGAGGTGAACATGGACACTCTGTCTGAAGGGCTGTCGAACCTCACACCGACCTCGCCCACCACCACTGGCCCGCCCCCTGTCTTTCCGCTTGCCAATGACATGGTGCAATCCAAGTCTGCCACTGTGATCCACAGTCCACTCAGCCAGTCAGCTCCCTCCACACTGTGCCATATCCGCACTGACCATGCCTACCAGGCCACTGCTCCTGTCAGCATTCCTACCGTGTCCTCCGAGCCACTGCACAACCACAGCGCCATCAGTGTCTCCTGGCAGTCACCTTCCATTATCTTTAAAAGCCAACCAGTAAgaaagcatGGTGCAGTAACTCATGTTGGCATTTTGAGCACTGGGGAGAAGAGACAGACTGTCACACATGCCGTCAGCAagacacacaccaccaccataTCTACACCCAAAGCCAGCACTGGAACCAGAAAACCCCGGGGAGAAGCGAAGAAGTGTCGCAAAGTGTATGGAATGGAGAAGAAAGATCTGTGGTGCACGGCATGCCGCTGGAAGAAAGCCTGCCAGCGCTTCACTGACTGATTTTACCCTTTCTCTTGCATATATAACAGGCTCTTCTAAAATCAGTGTCTGAATCACTGACTCACTGTTGACCCCCTCTTGTGCACCATAAAGGACTCCACTCCTTGAGGACTCTCAGAATTAGGTAAGGGGCTTTTCTAGCAAGTGAGCTGTTTTATGTCCTCCACACCGCAGCAAACagtaaaacacatttcactctTGTgaaacattgcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302303 lncRNA downstream 1426 15182157 ~ 15185972 (-) True G255385
TU302322 lncRNA downstream 6758 15180386 ~ 15180640 (-) True G255403
TU302215 lncRNA downstream 308892 14875644 ~ 14878506 (-) True G255306
TU301946 lncRNA downstream 483128 14700224 ~ 14704270 (-) False G255071
TU302326 lncRNA upstream 734 15258485 ~ 15260105 (-) False LOC113530775
TU302361 lncRNA upstream 74375 15332126 ~ 15332451 (-) True G255435
TU302438 lncRNA upstream 196382 15454133 ~ 15454354 (-) True G255506
TU302664 lncRNA upstream 395096 15652847 ~ 15657703 (-) True G255693
TU302681 lncRNA upstream 485989 15743740 ~ 15820154 (-) False znf512b
XM_026920555.2 mRNA downstream 46419 15125347 ~ 15140979 (-) True gss
XM_026920118.2 mRNA downstream 70772 15093797 ~ 15116626 (-) False acss2
XM_026920116.2 mRNA downstream 70772 15093797 ~ 15116626 (-) False acss2
XM_026920115.2 mRNA downstream 70772 15093797 ~ 15116626 (-) True acss2
XM_034311947.1 mRNA downstream 189874 14981346 ~ 14997524 (-) False osbpl2b
XM_026921090.2 mRNA upstream 1834 15259585 ~ 15317365 (-) False LOC113530775
XM_026921088.2 mRNA upstream 1834 15259585 ~ 15317365 (-) False LOC113530775
XM_026921087.2 mRNA upstream 1834 15259585 ~ 15317365 (-) False LOC113530775
XM_034312166.1 mRNA upstream 1834 15259585 ~ 15317365 (-) True LOC113530775
XM_026921243.2 mRNA upstream 82245 15339996 ~ 15357857 (-) True birc7
TU301948 other downstream 483128 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 1036817 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 230006 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 457284 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1390072 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1555633 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2418814 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile