RNA id: XM_026920092.2


Basic Information

Item Value
RNA id XM_026920092.2
length 5472
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC113530264
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21628132 ~ 21671352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCTCGATGTTCGCTGCTGCGCATGCGCACGCGCACAGAGGTTATCGAAATATGGCGGCGAGGTCTTGCGAAAAGTACTGAGATCTGCTTCAATTTCGACAAATTCGCCCAGGTTGGGAgccacagtgtgtgtatctgtgtgttgtgtagcAGTGGATCAGTGTTGTGGAGCTGCGGTAGCCAATGAGCAGCATGGGCAGGACAGCACTGAAAGATCAGAAGGAGAGTAAGAAGGAGAAGGCAGGCAGGAGTACTCCTGTCAGCACAGGACCTCCACCAGTTAAAGCCCCCGAGTCATTCTCATGGGAAGAGTATTTGAAGGAGACGTCGTCCACACCTGCCCCTCCCAGCTGCTTCAGACAGTCTCGCATCCCTCCAACAAATGACTTCAAGGCTGGGATGAAGCTGGAGGCTCGCGACCCTCGTAACTCCACCTCTGTCTGCATCGCCACAGTGATGGGCATAACGGGCATCAGGCTCCGCCTACGCTTGGACGGCAGCGACAACACCAACGACTTCTGGAGACTGGTTGACTCCTCAGATATTCAGCCAATAGGAACATGTGAGAAGAATGGAGACATGCTGCAGCCCCCGCTGGGGTTCAGGATGAATGCCTCCTCATGGCCCATGTTTTTACTGAGGACACTGAATGGGGCAGAAATGGCGCCAGCGTCTGCGTTCAAAAAGGAACCTCAGAGGCCCTCTCAGAATAGTTTCAAGCCAGGCATGAAGCTAGAAGCGGTGGACAAGAAGAACCCCTACCTCATCTGCCCCGCCACCATCGGCGAGGTCAGAGGTGAAGAGGTGTTTGTGATGTTCGACGGCTGGAGAGGAGCGTTCGATTACTGGTGCCGTTACGACTCCAGAGACATCTTTCCTGTGGGCTGGTGTGCGGTGACCAAACACAGCCTTCAGCCGCCTGGGAACAGCATCACCCTCCCAAAGCCGCTATCTGCACCTTCATCTTCcacttcctcctccttttcttcttcgCCATCCAAGCAGACGCGGCGCTCCATGCATTCTTCGTACCGCTTGCCCACACCGCTGCCCCCGCTGCCCGTGCGGAAGGGCGTGAGGGGCCGGCGACCCAAAAGCGAGACCATCGCCCTGCTCAAGGCCCTGGCAGCATCATCAAGCGCTCAGAGTCCAGGGGCTCAGACGAGTAACACGGCACCCGAATCCACCCCACAGCTCCTCCCACGCCCTCACAAGAAGAGAGGACCCAAACCAGGCAGCAAGaggaAACCCAAACTCCTGCAGAGCTCCATGTCAGCACCAGCAGGTTCAGACTCCAGACTGCCATCTTCTCAGGTGTCCAGGGACGGCCTGTCTCCGCTGAGCTCTCCATCCTCTGTGGTGTCCACAGtgtgtgtatacgtgaATAAGCACGGGAACTGCGGCCCTCACCTGGACCGTAAGCAGGTGCAGCGGCTGCCGGATCACTTCGGACCCGAGGCAGTGAACCTGGTGATGCAGCAGACGGTGCAGGCGTGTTTGGACTGCGCCTATCAGCCCAAAGTGCTGCTGGGGTGCCTGCAGAATCAGCCAGACGGTGGAGAGGTGGTGCGAGTGCGGACGGATGGAGGGACACGGATGGTAAAGCTGCCATCAGCATCCAGTGCCGCTTTCGTTCTGCGTTTCCTGGAGAAAGTGTGTCGACACCTGCAGTGTGATAACCTGTTCAGCAGCCAACCGTTCAGCCCCTACAGCAGCTACGACAGGAGTAAGTCAGTGAAAGAGGAGATGTCAGAGGCTCCAGCACTAAACAGAGGAGTAAAGCGAATCTCTCGAGACTCTCCACCCTATTCCGCCCCCCTCTCCCCCAAGATCCTCCACACGGATACACACCCTTCCGAAGctgagaCTTTGCCTCCAGAAGAAAACGGTTTATTGAAGGAGCAGCGCTTCATGGACTCCGCCTCTAACTCCATGACTCCCCGCCCACAGACGCTACGAAGCACCTCCGAATACCAGTCCCAACCCAGCAGTCCATACTACCATGGCAATGGCCCTCCCTTGCGCCGCCACTCCTCCAACCCCCCCACTCGCACCCACAGAAGAGTCGAAGctGCCAGCTCCACTACAGGTCCAGATGCAGCAGCAGCGGAGTGTGAGACTCCCAGAATTCCCAGCGGCAGAAGCCCTTCTTCGTGGTCTATAGAGGAAGTGATGCAGTTTGTGCGAGACGCAGACCCGACGGCGTTGGCGCCGCATGCCGAGCTGTTCAGAAAGCATGAGATTGACGGTAAAGCCCTAATGCTTCTGAGGAGCGACATGGTGATGAAGTACATGGGCCTGAAGCTTGGCCCCGCCCTCAAACTCTGCTACCACATTGAGAGACTCAAACAGGGCAAACAGTgaggattaaacacacacacacagtaacaggaTTAAACGCAGGCGTATAGGTACAGTACTGGTCAGGTTTACAGTACTCGATTAGACTCAGTATTGGGTTCAGCTCAGCAGTACTGAATTAGGTTTAAAATACTGGATGAAGCACAGCGCTGGACAGAGCTAAACTACAAGGAGTCACGGACATGCGCTGCTTTTCATCCATCCGAACCACCAAACAAAGCCGCAGACAGACAACAAGGAATGATGGACAGCAGACTCATGTCAGGAGTAAACTCTGGGATGGACACAGCAAGAGAACTGGGCAGCAATAAaaacagtcccacacacactacctgccactgagagagagagagagagagtgagagagagagctgagcgaCAAGTGAAGCAGAAATGGACCAACTCATATTGGTTATTTTATCACATACAGGTCTACTGGCAGTCCTTGTCTACCCCACAGAACCACCGCtgaacagatattatttggctcattttcagtgtgtggCTCTGCTACGAGTGTATCAGACGCAAGCAGCATAGCTGAAAactcatatatcatatatatatgtgcatctttctgtccttttttttttttgttcctgtttaTGTTCACTCTCTCatggttctgttttttttcctctttccttttctttgttttgctcAGTCCTCAACCGGTTCAGATCCACAAGAAAGCTGTCATTCTAAACAATTCCCCCCCCAAAGATGTTGATATTTGCTACGATTATTGCATTGTTGCGTGGAGAATTGGTGTGATGTCTTAATGTGATGAACGCATTTCTCCTCCCTACCTCCTGTCTGCAATACAGAGACAGTCCACTCCTGCAGATTCACTGCTGTGAAAACCAAACGGCACTGCAAATCGTTTCATCTCTgttgtgttctctctcttttttttttgtgatacgTACGCTGTGCTGTGTGCTTGTATTTATACTTTTCAGTGTCTAGTGTGGGGTAGCTGATCATAAATCGCCCCCATCTCCAACCTCTTACACAGCTTACCAAATTCCAGTATACGTCGTATAAAACAGAAatcaaatatatgtattttgAAGTAGacaaacattaactgaatcAGTTATAGATGATTTGCCTAATATGCAtctaaataaattgtattttattaataattataagtCACATTTCCACCTGGTAAGgtggataaaaatatgaatatgatgtTTCTAATGTAATTTTAATCTCCCTAAATTAAATTTTCTGACACATAAGGCTGCGTTCACAGCGACATTTTGATATCAGTCGTTCACACTTGAAGAAAGATGGAAAAGCTGTAATTCGACTATCTGTAAGGACAGCTCATGGCCAGCCTCAGCTCGGGATTTTAGctcagaggagaggagagtgtAGCCTCATAACAGCATCTTACCTTAGAAATGAAACGtgacacatttgcttacattcaTCAATATTACAGATTAGCGAAAGTGCTAAATGTTGCTTCAGACTATTCACTTTAAAAGGAGGATATCCTAGCAGACTTGCCCAGTCATTATacaggacatttttttctctttctcttcttgagaccaaaaaaataaaagagcataACCTTTCAGGAAAACCTGTGTGAATATGATCAGCAACATCACATGTGGGAAAAACACTGATCTAGAAACCAAACCAGCAACGCATTTAAATACTGACAGATCAGTTCTCACAGATGTCGGGATGTTTCTGTGAAAGCAGCCTGATGTATCCAAGATGGTTTTGGTCAATGTAAATTGTCTCCCTGGCCcagttatatatacatataaatgtatgtgtggcggtctgggaaaacccattgtATGCCGCTGTGGATGAATTCTGGCAAGTACTCCGACACCTCAAAAACGTAAATACTTTTCACAGAAAcgatgtggaaatgtttttatttacttttgccTAGGCTATCTTCCTGCAGAAATCATGgtgtgtaaggagccagtttaacaaacacagtggtaaaaacagtcactCTGTCTAAAGATGTCGAAAACCTTGCGAGGTGTCAATATTTAGTTTAGCCgtatcatttaatatttttgctgtGCTACGATGATATtggagacacctgaaaacaaCGTTTTTCTGCTTTCTTAGCTAAGAcgaaaataaacaataaaattccCCCAAAAGAATACCCAATTAACTGAAAAGAATTTGCTTTTAATCGCTGTAACTTTCACTTAATGTGGACTTTATAActtggaaatctttttttttttttgaaccaaTAAAACACTCTGACTGGTAAAACTGCAGGGTAGAACATGTTTATCTTTATCGTTTAGCTGTTAACACGGAGCCGCATCGTCCGCATCTCTAAATTTCCTCAAAGTTGTTGAATAGCTATGTACTGTAGCGAAACAGGTATAAGCCTTGTCAGTTTAGTTTGTACTCAGATAATGACTGTAAAATGTCCACAGTTTTCAATTTTGTTggtaaccagactttaaaatgttacaattttaCTTCTGTTTGTGAGAAACATTAATGTTTGgtcatgtgaagggttttcccagtcCGCCACGTGAGAACGTTAAGTTGGAATTTTGCCGTTAAAATAATCCGTATCATTGGTTATGGTGAAATCTTCCTTTTGTCAAAACATTTGCATGAATATTCTTCATAATGTATATTCTTATTGTGTAGACAGGATCATCGAGATCCCGCCTGCGTTTTATTAGTCCGTTTTTGCAGGTTCGCGTCCTGCCGTCCTTCTCAACTCCTCCAAAAATGAAGACCACATTTCAAAGGGAAGTGTTTTATATCGACATGTCGCAGATGCGTCGTGGCCGTGGAACTCCAGCGAAAAAAAGTAATCCACTCGTCAGACTCATCCAGTTTAcgtcacaaaaaagaaaataaattggGATCACAGAGTGACACAGGGTTCATCAGTGTATTATGGGTTTCACCATAAAATGCAGCAGCAGGAATGTACATGTTTTtgtagaaaaagaaatattttaaactgaaCATATTGTATATGAAAGTAGAAAATGTGAAGCTTTCGGGATGGGCCGGGGCTGTCGTCGTCAAAAGTCTATCTTGTACTGCCTTCTGATACTTTATACTGCGCTT

Function

GO: NA

KEGG:

id description
K11465 SCML2; sex comb on midleg-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403152.2 lncRNA downstream 29003 21588429 ~ 21599129 (-) True LOC113530427
XR_004579674.1 lncRNA downstream 41493 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA downstream 42252 21583715 ~ 21585880 (-) False LOC117599221
TU306366 lncRNA downstream 72672 21514647 ~ 21555460 (-) True G258771
TU306289 lncRNA downstream 253029 21374898 ~ 21375103 (-) True G258700
TU306559 lncRNA upstream 78439 21749791 ~ 21750001 (-) True G258940
TU306562 lncRNA upstream 80053 21751405 ~ 21752452 (-) True G258942
TU306582 lncRNA upstream 127484 21798836 ~ 21799244 (-) True G258961
TU306588 lncRNA upstream 133744 21805096 ~ 21806760 (-) True G258966
TU306772 lncRNA upstream 345134 22016486 ~ 22021151 (-) False cpeb2
XM_034312021.1 mRNA downstream 132077 21494416 ~ 21496055 (-) True LOC117599277
XM_034311891.1 mRNA downstream 153290 21472718 ~ 21474842 (-) True LOC117599258
XM_026920132.2 mRNA downstream 323504 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 333359 21287614 ~ 21294773 (-) True LOC113530756
XM_034312083.1 mRNA downstream 355121 21259533 ~ 21273011 (-) False wu:fy63c09
XM_026920917.2 mRNA upstream 157913 21829265 ~ 21835197 (-) True ftr92
XM_034312131.1 mRNA upstream 186860 21858212 ~ 21883246 (-) True gpsm2l
XM_026920925.2 mRNA upstream 213313 21884665 ~ 21921592 (-) True ghrhrl
XM_034312129.1 mRNA upstream 253892 21925244 ~ 21954662 (-) False fyco1a
XM_034312130.1 mRNA upstream 253892 21925244 ~ 21954641 (-) False fyco1a
trnaq-uug_7 other downstream 273435 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 458434 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 760174 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1356225 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1508183 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 257823 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 774678 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1527230 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2092322 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2830381 24501733 ~ 24508467 (-) False tent5ab

Expression Profile