RNA id: XM_026920102.2


Basic Information

Item Value
RNA id XM_026920102.2
length 2202
RNA type mRNA
GC content 0.43
exon number 11
gene id casp9
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18611153 ~ 18620055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGTATATTTTAAAGCAGATCCAATTTAATACATTCAAGCTATTTGTGGATGCAGTCTACACATATTCTACAAGTACTGTTGAAATCTTAGGGAAGATATATGCAGTAATTATGAACTGAACCTCAGCAGTTCTGCGCACACAACCGCACAGTCTGCGTTTCTTCAACGCAGTTTGTGTTGCACAAACGCACCCAGGAGTGACGTCAGTGTTCCGTGGGATGCCTGATGTAAACAAGGAAGTACAAAATGGATCGCAGGCACAGAGAGATTCTTCggcagaagagaagagaactTGTGTTAACTTTAGACCCTTCAGATGTTTACGATGGACTTTTGTCAAGGGGCATCTTTACTGACGATATGATAGATGAGATAAAGAGCTCTGGACCCAGACGTGCTCAAGCCCAGCAGCTGATGAGGGACCTAGAGACACGAGGAAGTCGGGCTTTCCCAGCCTTCCTGGAGTGCCTTCGAGAAACTGGGTATCACAACCTGGCTGAACTGCTGGAGAGTGGAGATTCTGCACCAGTTTCTGTACCTGTTCCTCTCCCTGTGCAGCCTGCTGTAATCCCCCTCCCTGTCCCAGGGAATCCTGTAGATTTTAAAAAGCCAGAAGGAGGTAATGCTCCTGAGAAGCTTCCACAGAAACCAACCACTCTGCCTATCGCATCTCCTGAGGATGAAACTGAAATACCTAGAACACCTAGGCGCAGGACTGATAGCCTACAGAGCTATAAGATGGAGGCCAGTCCATGTGGAGTCTGTTTGATCATTAACAACGTGGAATTTGACGCTGCCTCAGAGCTAAAGAATCGCATGGGGTCTGACGTTGACAGTGAAAAAATGGAGAGGCGATTCAGATCTCTCAACTTTCATGTTATAGTTAAGAAGaacttaaaatgtaaaCACATACGACATGAGCTGTCCATGCTAGCTAAAATGGATCATTCTGTGTATGACTGCTGTGTGGTGGTCATCTTGTCACATGGCACTGAGGCCAGTCACAATCGCTTTCCTGGAGCAGTCCATGGTGTGGATGGTCCCTCTGTTCCAGTACAGATCATCACTAACTACCTCAATGGGCAGAACTGTCCTTCTCTGCAGGGCAAGCCCAAACTCTTCTTCATCCAAGCTTGTGGAGGAGGTGAGAAAGACACAGGCTTTGAGGTATCTCCGGATGAGGTACAGCACACGGCGGTAAAGCTTGATGAGCAGGCGGACGCCATCCCCACATCCTCCAGCAGTGACTCACTTAGCTTTTCTGATGAGCCAGACGCTAGGGCCACCCTCCCCACGCCCAGCGACATCCTAGTGTCCTACTCAACCTTTCCAGGATATGTATCATGGAGGGACACAAACACAGGCTCGTGGTATGTGGAGACTCTGGATCAGATACTGGAGAAGAATGTTGCCACTGATGACCTTGCCACCATGTTAATAATGGTGAACAATGAGGTCTCTCAAATATCTGCCAAAGGCCTGTATAAACAAATGCCTGGATCTTTCAACTTTCTCCGGAAGCTGTTCTACTTTCAGGTCCCAAAGACATGAGTGCAAGATGTATAAATCTTGAGCATCAAGATTGAGACTGGCTAATATTGATTCCATTTGAGAGAACAgaatcaacatttaaaaaaaaaaagttgattaatttttaacGCCAGTTTGCTAGACATGTCTGTGTGCACTATATAACTATGTAAACATGTTAACCATGCTGTTGGATTCTAATCCTGTGGTGACATTTATTACTTTGTGTTTTAAGATTTAGTACTGCATTtcataatgaatttttttaaatgatcaaaaaatTTGTCCAAAGATTCAAATACACACTTAGATTATGAAAACATATATGAAttgttcatgtgtttttaacttttttgttcATGGGTTTTGAGGGAGTGGTTAATTTTTCACACACCAGCTCCTCATCAGCACAAAAAGCTGACATGGCTAATctttggcaaaaaaaagtgagagtGCACATTTCAAATAACTCTGTAAATATGCTTTGTTGAAGTGTTTGCAAAATGTAGGCCTGGTTACATTAGATCAACAAGTGCCATtacaattacattatattactttacattacattacattacattatccTCAGGAAGGCTGATGGTTGTGTCTGATAAACAATCTGACTGTTTTTGTCTGATTAGCTAAAATACATAGTTGCATTTGTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304014 lncRNA upstream 282899 18326232 ~ 18328256 (+) True G256899
TU304013 lncRNA upstream 287085 18322069 ~ 18324070 (+) False G256899
TU303952 lncRNA upstream 530823 18078167 ~ 18080332 (+) True G256851
TU303953 lncRNA upstream 533343 18076948 ~ 18077812 (+) True G256852
TU303870 lncRNA upstream 666056 17944895 ~ 17945099 (+) True G256772
TU304259 lncRNA downstream 194 18620249 ~ 18621066 (+) False G257068
TU304260 lncRNA downstream 194 18620249 ~ 18621175 (+) False G257068
TU304261 lncRNA downstream 194 18620249 ~ 18621305 (+) True G257068
XR_003403140.2 lncRNA downstream 221698 18841753 ~ 18843237 (+) False LOC113530356
TU304314 lncRNA downstream 221733 18841788 ~ 18846170 (+) True LOC113530356
XM_026920076.2 mRNA upstream 113753 18490481 ~ 18497402 (+) True cd40
XM_026920971.2 mRNA upstream 259682 18346775 ~ 18351473 (+) True pfdn4
XM_034312065.1 mRNA upstream 370243 18193197 ~ 18240912 (+) True LOC113530861
XM_034312116.1 mRNA downstream 3416 18623471 ~ 18644765 (+) False arhgap4a
XM_026921094.2 mRNA downstream 3417 18623472 ~ 18644765 (+) True arhgap4a
XM_026921093.2 mRNA downstream 3418 18623473 ~ 18644765 (+) False arhgap4a
XM_026921011.2 mRNA downstream 26653 18646708 ~ 18651829 (+) True LOC113530736
XM_026920790.2 mRNA downstream 83397 18703452 ~ 18720369 (+) False fam3a
XR_004579712.1 other upstream 1490214 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2102775 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2214943 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 2216155 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 2381749 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 259513 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 412862 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 858247 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1770754 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1890189 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile