RNA id: XM_026920118.2


Basic Information

Item Value
RNA id XM_026920118.2
length 4197
RNA type mRNA
GC content 0.43
exon number 18
gene id acss2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15093797 ~ 15116626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGTAGAGCACGATAATGTCCCTCTAAGGAGCGTGTCTTGTCTTGTACCCAGTGTGTAAGGACGTAAGAACGGATTTCGGGGACGTGCGACCTCTGTAAACGCAGGTTTTATAAACgttattttgcattattaatgGCAATAAGCTCAGTATTCGGACAGGACAGCTAATTGTGAGCAGTGAGGGAGTGAACGCAATTGACAAGTTCATTTTGGAAGAGCTAGAAAACCCAAACGGCCTCATCTCGCCTTCAAGTGCAAAGTGCAAGTACAGCTGCTTTCCTTAGCAGAGAGCGGCACTGAGCAACTAAATACGCTGCATGCCCTTTCTACATGTTAGATCAGATAGCCTGTGAGCTGCGTATATTTTGCTGGTTTATCATTTAAACAGGAAAATGTCAGCCAATGTCAGCGTGCTCTGAAGAAGGCAGCTCGAATTAGCTACAGGATCTGTCCTGATACGAGCTGGCTGTTCTGTAGCTGTTAGCTTGACTCGTGCTAGCACATACTGTTCGCTTATCCAAGTCCTGAAAGCTCAAGACCCATAGACTGGGCTCCCTTGTAAACAGTGTTTGTATGCGGAAGTTACTAACGTAGGGCACGTTTAACCAGGGGACTGAAGGAAGTTCACCAGCTTCTGGTTACTTCTGTTTTACACTTCACCGCACCTCAGGAGTTGGTAAGGCTCAGTGTAGAAGAGGCAGTAAAAAGGACGCAGTTGTTGGTTTTGCACTGATAGTTTAGCTTGCTATCAGCTACGATGCTACCTGATAAAGTTCCCGCGGAAGAGACGCTTCACGCCCCCGAGGAGCTGAAGAAGCAAGCTTACATCTGCAGCTTGGAGAAATACACCGAGCTCTACAACAAGTCGGTCGATTCTCCCGAggAGTTTTGGGGAGATGTTGCCAAAGATTTTTTCTGGAAGACCAAACATACAGGCAAGTTCCTCGACTATAACTTTGACGTGACCCAGGGAGAAATTTACATCAAGTGCATGGAGGGAGCCACCACAAACATCTGCTACAATGTCCTGGACCGCAACGTCCATGAGAGGAAGCTGGGAGACAAAGTGGCTTTTTACTGGGAGGGGAATGAGCCAGGAGATGAGAAGATGGTGACCTATAGAGAGCTACTACAGCAAGTGTGCAAGTTTGCCAACGTTCTTAAGTCACAAGgaGTGAGGAAGGGGGATCGCGTCTCCATCTACATGCCTATGGTAGTTGAACTGGTGGTGGCCATGTTGGCTTGTGCCCGAATCGGAGCTGTGCATTCGATTGTGTTTGCAGGATTTTCAGCTGAATCACTCTGTGAAAGAATTATGGATTCTCAGTGTTGTCTACTGATTACATCTGATGGCTTTTACAGAGGGGATAAGCTCATAAATCTTAAGGTTATTGCTGAAGAAGCTCTTCAAAAATGTCGAGACAAgtCTTTTCCTGTAGAGCGGTGCATTGTGTTGAAACACTTATCAAAGGAGGAACCAGAGGCCTCTTCCCCAGGCTCCATGTCACCCCCAGCAAAACGCTCTTGCCCTGACTTGCAGGTGCCCTGGAACCCAGAGGTGGATGTATGCTGGCACACACTGATGGCTGGAGCATCGGATGAGTGTGAGCCAGTGTGGTGTGACTCTGAAGACCCTCTCTTCATCCTTTACACTAGCGGCTCCACTGGCAAACCAAAGggtGTGTTGCACACTGTCAGTGGTTACATGCTTTACACTGCTGTAACATTTAAGATGGTGTTTGACTACCACCCTGATGACATTTACTGGTGCACTGCAGACATAGGCTGGATTACAGGTCACTCCTACATCACCTACGGTCCACTGGCTAATGGGGCCACCAGCgtcctgTTTGAAGGCTTGCCCACTTATCCTGATGTTAGCAGAATGTGGGAGATAGTGGATAAATACAACGTCTCCAAGTTTTACACAGCACCCacagccatcagactcctcatgAAGTTCGGCACTGAGCCAGTCCACAAgTATAAGCGGAGCTCTCTGAAGATCTTGGGTACAGTGGGGGAACCTATTAACCCTGAGGCCTGGCAGTGGTACTACAGTGTAGTTGGGGAGAAGCGATGCCCCATAGTGGACACCTTCTGGCAGACTGAGACAGGAGGACATGTATTAACACCTCTTCCAGCTGCCACTCCTCTGAAACCAGGATCTGCAACATTTCCGTTTTTTGGAGTCGTTCCTGCCATACTGAATGAGTCAGGCGAGGAACTTGAGGGACCAAACGAAGGTTACCTGGTATTTAAGCAGCCCTGGCCTGGGATGATGAGAACCGTGTACAGGAACCACCAGAGATTTGAGACTACCTACTTTAAGAAATTTCCTGGCTACTATGTAACTGGAGATGGTTGCCGCAGGGATAAGGACGGGTACTACTGGATCACAGGCAGGATTGATGACATGCTGAATGTTTCTGGTCATTTGCTGAGCACTGCAGAGGTGGAGTCTGCTCTGGTGGAGCACGAGGCAGTAGCTGAGGCAGCTGTGGTAGGAACGCCACACCCTGTTAAAGGAGAAAGCCTATATTGCTTTGTCACACTCAATGACGGCATCAACTATACTGCCACCCTGGAGGCTGAGCTCAAGAAACaagtgagagagaagatTGGTGCCATAGCTACACCTGACTACATACAGAATGCACCTGGGCTTCCCAAAACCAGATCAGGTAAAATCATGCGGCGTGTGCTACGGAAGATAGCATCTAACCAGCAGGATTTAGGAGACGTGTCCACGCTAGCGGACAGTTCAGTTATTGAGCAGCTGTTTGAGAACCGCTGCTGTACTGCTGTGTGAACATTAGTAGACACTATTAAAACCACTTCACTTCGGCCCAGTAGGGGTTCAATTTTAAAGAAGGGCATATgggtaaaatgaaatgtatagcAATCTTTGTGGAAAGTCACCAGAGAAAAAGATGTATAAAATGTCCTGCAGTTTTACAATCTCAAGGAACTAAAAAGATTTGGAGGGAGATTTTACTGGACTcgtttgtatatttgtttagtATTGGTTAgttataacctttttttttctctgtagatGATTGttttttgaaggaaaaaaaataaatctctgtatttttcagatatttcaCGCACATACAGGATTTgagtactttttatttaatttactcaATCATAGGTAGTTTTTATATGACAGAAATAATTTTCATGTGCCAACGTTGAAAATCATGTGATTGATCCCAAAAAGACTCATGTGGTTTTACATGTAAGAGCTAACAGTCTCTTCTTATTGCAAGACTAATGTAGCAAATGTTAATCTCGGACTTCTAAGTTAAGATGTTGGTAGGATTTAAACATGTCTCAAGAAACAATCTGTATACACATTGTAGATTATCTCTGCTTTAGGTTATGATCAGTAGGTACAAAATTCCCCAATATATTGCATGAAAACTGTATAAATATTTGCAGTGATCTACATATTTTGTAGCATAAGCTTGTACTTGTCTGTTTAAAAGAGGGAGGACATGGTTCTCTTTAAACTGAACtgagaaaaggacaaaaatatttaataccaAAATGCTGTGATCCAATAAATACGTTTTCACTACTGGATCATTCAGTAGTGATTGATTGTTTTGGGAATTGTGTTCCTCTACAGACCCATCCAGTCATTCCATAATTTCCTTTTCCTACACAAGGAAGGGTCTGTGTTATCAATGGAGCAACTTGGATAAGATGCCAGTTTGTAAATATGCCAGAATGTTAAATACACACCAAGTCTAGACAGTGAGGTTATGATGTTAAGCTGGGACTTGATGATGTGACTTGGATCCACTGTCAGACACTCTGATCTTGAGGTATTTTTCAGGATTCAGctgaaattattacattttcaaatgaaAGTCAGTTCTGAATGTTGATCAAGTGGCAGTTGTTCTGCTACATTTCCTTTAATCTTTATTTAGCTCAGGATTGGTTATCGTGACGAGTTTTAGGAATGTTATTTACATCCTGGAGTCCCCATTAATGGtctcacttttctctctcttaccagaaaaaaaaaactttaatgttctttttatCTTGTAATTGTCTATAATCCCCTTTTTCTGTTCtgaacaatatattttaatcaacATATTTTGAAAGCTAATAAAATTATGGCTCAAGTGTACACTGGTTTGAGTGAAATAAAGTACCAGTTGATTATCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302215 lncRNA downstream 215291 14875644 ~ 14878506 (-) True G255306
TU301946 lncRNA downstream 389527 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA downstream 389527 14700224 ~ 14704270 (-) True G255071
TU301888 lncRNA downstream 561209 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 1393392 13700009 ~ 13700405 (-) True G254567
TU302322 lncRNA upstream 63760 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 65531 15182157 ~ 15185972 (-) True G255385
TU302304 lncRNA upstream 65531 15182157 ~ 15227960 (-) False G255385
TU302326 lncRNA upstream 141859 15258485 ~ 15260105 (-) False LOC113530775
TU302361 lncRNA upstream 215500 15332126 ~ 15332451 (-) True G255435
XM_026920902.2 mRNA downstream 91120 14981346 ~ 15002677 (-) True osbpl2b
XM_034311947.1 mRNA downstream 96273 14981346 ~ 14997524 (-) False osbpl2b
XM_026920171.2 mRNA downstream 114509 14973016 ~ 14979288 (-) False adrm1
XM_026920169.2 mRNA downstream 114509 14973016 ~ 14979288 (-) True adrm1
XM_026920159.2 mRNA downstream 246782 14840288 ~ 14847015 (-) True slc16a7
XM_026920555.2 mRNA upstream 8721 15125347 ~ 15140979 (-) True gss
XM_026920086.2 mRNA upstream 70772 15187398 ~ 15257751 (-) False si:rp71-79p20.2
XM_026920085.2 mRNA upstream 70772 15187398 ~ 15257751 (-) True si:rp71-79p20.2
XM_026921090.2 mRNA upstream 142959 15259585 ~ 15317365 (-) False LOC113530775
XM_026921088.2 mRNA upstream 142959 15259585 ~ 15317365 (-) False LOC113530775
TU301948 other downstream 389527 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 943216 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 371131 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 598409 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1531197 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1696758 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2559939 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile