Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034311570.1 |
| length | 1415 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 9 |
| gene id | vdra |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 21378129 ~ 21437863 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0070561 | vitamin D receptor signaling pathway | biological_process |
| GO:0001503 | ossification | biological_process |
| GO:0043401 | steroid hormone mediated signaling pathway | biological_process |
| GO:0055074 | calcium ion homeostasis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0005499 | vitamin D binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU306276 | lncRNA | upstream | 27797 | 21384291 ~ 21386101 (+) | True | G258689 |
| TU306264 | lncRNA | upstream | 59168 | 21354440 ~ 21354730 (+) | True | G258680 |
| TU306028 | lncRNA | upstream | 281845 | 21115050 ~ 21132053 (+) | True | G258459 |
| TU306031 | lncRNA | upstream | 305883 | 21107347 ~ 21108015 (+) | True | G258462 |
| TU306054 | lncRNA | upstream | 308797 | 21103714 ~ 21105101 (+) | True | G258483 |
| TU306345 | lncRNA | downstream | 41369 | 21479232 ~ 21496565 (+) | True | G258753 |
| TU306351 | lncRNA | downstream | 62115 | 21499978 ~ 21510994 (+) | True | G258758 |
| TU306346 | lncRNA | downstream | 114055 | 21551918 ~ 21556438 (+) | False | G258753 |
| XR_003403132.2 | lncRNA | downstream | 162759 | 21600622 ~ 21602468 (+) | True | LOC113530300 |
| TU306502 | lncRNA | downstream | 312148 | 21750011 ~ 21752454 (+) | True | G258883 |
| XM_026921199.2 | mRNA | upstream | 61882 | 21323924 ~ 21352016 (+) | True | calcrl2 |
| XM_026921100.2 | mRNA | upstream | 90675 | 21315381 ~ 21323223 (+) | True | ttc29 |
| XM_034311684.1 | mRNA | upstream | 90675 | 21315381 ~ 21323223 (+) | False | ttc29 |
| XM_034311890.1 | mRNA | upstream | 101103 | 21310075 ~ 21312795 (+) | True | LOC117599257 |
| XM_026920123.2 | mRNA | upstream | 126293 | 21275430 ~ 21287605 (+) | False | LOC113530283 |
| XM_026920337.2 | mRNA | downstream | 14405 | 21452268 ~ 21455848 (+) | True | LOC113530406 |
| XM_034312085.1 | mRNA | downstream | 83483 | 21521346 ~ 21535366 (+) | True | LOC117599284 |
| XM_034311713.1 | mRNA | downstream | 100182 | 21538045 ~ 21542427 (+) | True | LOC117599233 |
| XM_026920094.2 | mRNA | downstream | 173940 | 21611803 ~ 21626745 (+) | False | zmp:0000001174 |
| XM_034311600.1 | mRNA | downstream | 174299 | 21612162 ~ 21626745 (+) | False | zmp:0000001174 |
| TU306101 | other | upstream | 183027 | 21228320 ~ 21230871 (+) | False | si:ch73-290k24.5 |
| XR_004579743.1 | other | upstream | 506648 | 20903105 ~ 20907250 (+) | False | ubxn10 |
| TU305940 | other | upstream | 508825 | 20903147 ~ 20905073 (+) | False | ubxn10 |
| XR_003403172.2 | other | upstream | 899703 | 20510244 ~ 20514195 (+) | False | LOC113530729 |
| TU305571 | other | upstream | 1015184 | 20390809 ~ 20398714 (+) | True | G258096 |
| TU306357 | other | downstream | 100391 | 21538254 ~ 21542254 (+) | False | LOC117599233 |
| trnal-uaa_2 | other | downstream | 873943 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
| XR_004579671.1 | other | downstream | 1233762 | 22671625 ~ 22679550 (+) | False | LOC113530514 |
| TU307769 | other | downstream | 1933884 | 23371747 ~ 23383653 (+) | True | LOC117599309 |
| TU307771 | other | downstream | 1933884 | 23371747 ~ 23383653 (+) | False | LOC117599309 |
