RNA id: XM_026920137.2


Basic Information

Item Value
RNA id XM_026920137.2
length 2995
RNA type mRNA
GC content 0.47
exon number 8
gene id c1qtnf12
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20008581 ~ 20033502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGCTTCAGTCAGGAAGTTTAGGGAGTGTAGGAGTGCATGAGATTGGAAAAAGCAAGTGTGTCGAAACAAGCAGGCACAGAGCAGGCAGGACCCACCACGCAGCCCAGACACggaggtgtgtgtgcttgtggtTTTAGACTTGGCTGTTGACTTAGGGGCTTCTGAGTTGAGTGTGCAAGTGGCTACATCGACAAGAAAACATAGCAATTGCTGTCTCCACCAagtccttcttcttctttgtagTTTGCTTGAAGGTGTCTGCAggaaatcagttttttttccctgagagAAAACAAAGCTGAAAGAAGGGCAAAGGCCAAGACAACTGGAGTGACTCTAACTTCTAACTCCCTAAGGACTTTTTTCCATCCACCTTCAGGAGCAGACGACTACACTCACTAGAGAAACTCCAGCTCATCACAACTGTCTCACCACAGCCTCCAAGCCAGAGAAAGAACAAGGGAATCTGGGGAACCCACCATTCCAGCCCCCTCCTTCCCCTGCCTTGGCTCCTGGCCCCTCCTCTGCAGGCGCCCCATGGTACCCTCCACCCCCAGTGGGGCAGGAAGCGTGAAAAATCTCACTAATGGGTTTATTTGCTGTCAGACCAGCCGCGATCTGTCACTCCCTAGGACTGCTCTACTTGACACTCCTCATAGTCGAGTGAGCTGCTCAGCTTAGTCTTAgtaaattttacttttactacCTACTGAGACCATCATCACCTCTAGCCTTCCTCCCTAAGAAGGGAGTCCTTGAGCTGAAGTGCCTGTCCCTCAAACCAATTTGCTCCACTGAATCCAAGCATAGTTGGGGAAACTCCAGCTGTCCCCAACAGAGGGGTGTGCTTTCCAAAGTGAGGCTTGTTTGAAGGATCTGAAGACTGCTTTGGGAGATTGATTGGAGAACAAAAGATGCGCCTCTGGCTGCTAGCCGCATTGGCAGCTCTGCTTTGGAGTCACGGCACACTCCTGGAAGGGGCTGAGGCCAAAAAAGCACGCAAGAGGCCGAAGGAGATGACCCCGCAGCACACCGAGGTGTTCAACACCACACTTTCCAACAGcgaggaggaggatgagagcACAAAGGTCACAGAGAGCCAAAGAGTAGACCCACATGGATCATGGATGGATTTTGTGAAGAGGCCGGTTGGCAACTTCCCGGGAAAATGCCGGAAAAGGAAGCGGCCACTGCCGGGACCTCAAGGACCTCCTGGCCCTCCAGGACCTCAGGGCCCACCAGGGGCCCCTGGAGCAGAGGTCACTCAAGAGGTTTTGCTGAAGGAGTTTAAAGAAATGATCAAAGAAGCCACGGAGAGGAGAGCGTTGGTGGACAGGGCAAGCGGGCAGAGCCAGCTGCCCACAACTCTGCTGGCACTGGAAGGTATGGCGTCGTACCGGAGGATCGAAGAGGCCTTCCACTGTAAGCTCAGAGGGCCTGTCGTGGTAGACAAGAAGACTCTGACTGAGTTGCAGAACTTCCAGACACCCCCTGCCAAAGGTGCCTTTCTCAGAGGGACGGGGATGGATCAGTCCACTGGCCGATTTACAGCGCCCATCACAGGAATTTATCAGTTCTCTGCCAACGTCCATATTGACCACAGTGAGGTGAAAAGGAGTAAAAACCAACTCAGGGCCAGAGACAACGTGAGAGTCCTGATCTGCATCGAGTCTCTCTGCCATCGATACACGTCTTTGGAGATGATCGTTGGCTTGGAGAGCAACAGCAAGATATTCACAGTGTATGTTCACGGATTGCTGGAGCTCCAGGCTGGTCAGTACACCTCCATATTTGTGGACAATGCAGCAGGAGCTTCAATCACGATACAGAACGGCTCGGATTTCATGGGCATGCTGTTGGGGGTATAGCCTCCCTTCGTTTTTCCTCCCACCTAAGACTGCTTTCTTTTGGACTGCCATCCAACACTGAATCAAATAGTGGACAGCCAGAGGCAGCTAACTGCTCTGCAAATGCTTCAGTATGAGATGACTGAACCACTGCGCTGACTGTGGCACATCTGTTTTACGCCGTCGGTAAAAGACAGTCGGAGGCAATTCTTATCACAGCTTGGAATGAAAAGACAATGTGGATCTTTAATTCAGCTGTAGGCAGGCTAAAAGAAATTCTGAGTATTTTCATATGCAACAAAAGttatctttttgttttattgggGTTTTAAGTATATGATATTGAACAGAATTTATTTTGTGATACATATATAATCTACAGTAGATGTATACAAAGATATATGATAAGACAAACGTTGCTTTGAAATCTGACTCATATCTATGATACGGAttcattatttgaaaaaaatttactgCTATTAGCAGAGGACGTATATTTTTCAATCTGAGTAAAGGCGCTGGCTATGGACTCACTGACCCTGACAGATGCTGTTGTCATTATCATTTCTAATGTACACACCTCTGCTTTGTTGACTGCTAATGATCACACAATAGATAACGCACCATAACACCCTGCACTaggaaaatgaatcatgtgattgCTCATAATGAACACATTTGCCAGCTTGCAAAAGGGCAAAACCTGGAGGCGATCAAGCGCACCATAAAAAGCAATGATTCCAACTCTGTTTATTCATTATGCCCGCTTGAAAACACTTCCAGATTTGAGCTAGGGTACTTGGAATGTATGCAGGCACTTGGGAAGAGGTGCCTCCATGACAAATTAGACATGTTAGAGATTCCTGTTGCACTCTATTCTTGTTTTTTGGATGTGACAACCACGTCAACAACGAGCCCTCTTCATTTTTTCACGATTCATTTATAGCAGACAAATATATGAGTACAAATACAATTGTTTAAAGTATTTATGTGAGTATTAGGATGTCAATATGAGAGCgataataaataatgtgaataaAACACCATTTTTAAGCAGATTTACTCTTCAGGAGTTTGTACTGTAGCATGGAGCTTGAACCTTTTTACATTCAATAAATGTAAGTAATATTTGTGTATAAAGTTGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K21410 C1QTNF12, FAM132A; adipolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 393902 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 417451 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 426899 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 528849 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 543245 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 17919 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 95403 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 110523 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 280860 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 330553 20364055 ~ 20373180 (-) True LOC117599243
XM_026920112.2 mRNA downstream 30793 19968226 ~ 19977788 (-) True olfml3a
XM_026920753.2 mRNA downstream 145500 19849660 ~ 19863081 (-) True klhl21
XM_026920862.2 mRNA downstream 167962 19822267 ~ 19840619 (-) False nol9
XM_026921101.2 mRNA upstream 11803 20045305 ~ 20051294 (-) True LOC113530786
XM_026920675.2 mRNA upstream 40358 20073860 ~ 20098987 (-) False nckap5l
XM_026920676.2 mRNA upstream 40358 20073860 ~ 20098987 (-) True nckap5l
XM_034311797.1 mRNA upstream 40358 20073860 ~ 20098604 (-) False nckap5l
XM_026920679.2 mRNA upstream 40358 20073860 ~ 20096623 (-) False nckap5l
TU305224 other downstream 387021 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 621540 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 880045 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 943999 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1495324 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 67497 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 70272 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 76961 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 218668 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 797326 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile