RNA id: XM_026920139.2


Basic Information

Item Value
RNA id XM_026920139.2
length 2614
RNA type mRNA
GC content 0.43
exon number 2
gene id sox18
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13466509 ~ 13488511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAACGTTCAAATTTGGAGCTGAAAACACTCAGCTTGCTTGGACAGCAGGAGCTAGTGAGCACTGTCATCTATCTTtgggaatttatttttatttttctaccaACATCAGACCAACATTCCTGCTTTGAttcttgtcatttttgttttctgttctctaataatttttttttacatgcgtATGCGGGGAACATAATTGCAGTACAAACATAACCAGAAAAAACTGACAGGTCCTGCAATTGGCTTTAATTTAGCAAACTTTGTGTCATCATCACAAGGAGGTCTTTGCTGGAATGAATATATCTGAGTCTAGTTATTGTTCAGAGGCCAGCACTCAGCCCAGCCAGGTTGTGGAGTGTGGAGCATGGGTCGCTTCGTCATCTTCCAGCCCAGTAGGTCCTGAGAGGAGCCGCAGGTTTGATCATGAAGCAGGTGGTGGAGTGAAGGAGAGGAGAACAGGAAGCCCGGATTCAAGCCAATCCAGTGAGGGAAAGTGTGGGGCTGAGCCGAGGATCCGGAGGCCCATGAATGCCTTTATGGTGTGGGCTAAGGATGAACGCAAGCGGCTGGCATTGCAGAATCCAGATCTACACAACGCCGTGCTAAGCAAGATGCTAGGCCAGTCCTGGAAGGCTCTGAGCACACTGGACAAGCGTCCCTTCGTAGAGGAAGCCGAACGTCTCCGACTGCAACATCTTCATGACCATCCCAACTACAAATACCGGCCTCGGCGCAAAAAGCAGCCCAAAAAGATAAAGCGAGTGGAGCCTGGCCTGCTTCTCCATGGTCTTGGTGGATGCTCTGGGACTGGAGATGCCTACCCCCAGCACCCTCATCCCCACCACCTTCTACCCTCTTTGGGCCATTTCCGAGAACTTCATCCTGGATCTGGTGCACAGGATCTGGAGATCTATGGCCTCCCCACGCCTGAGATGTCTCCTCTGGACGTGCTGGAGGAGGGCGGAGGAGACTCTGTCTTCTTTCCCCCTCACATGCAGGATGATGTGGGCTTGGCACCTTGGGTCAACTATCACCAGCACCAACAGCAAAGCCAAAGCCACCATGCTAACCACCATCCCCCAAATATCCACTCTCTCCACCActcccacccccacccccacctcaACCAGAAACCTGCACCAGGTTGCCGTTCCATGCACGAGAAATGCTCAGAACCTACGAACCCTCACAATCTCTTCCCTTCCCATTCCAGTATAAGTCTCCCAGAAGAGGCTAAGGTCCCACAACCCTCTAGTGTTCCACTTCAAAGTGTTTACTATGGTCAGATTTAtggaaacaccccacaacagCCCTTCACCTCTCAACTTGGCCAACTTTCTCCCCCTCCAGAATCTTCCACCCCGGTTCCTACTCCCTCTGCCTCCCAGGTTCCACCACCCTCCCTGGACAATAATGACCACCTAGGACCTTCAGCAGATTTCTGGAGCGAAGTGGACCATCATGAGTTTGAGCAGTATTTGAGTGCCAGCAGGACTCGAGTAAACAGGAGCACTGCATGTGAAGAGAGCAGCACGCTCATATCAGCCCTGTCTGATGCCAGCAACGCTGTCTACTACAGCGCCTGTATTACTGGATAAAGACTTCTAGCAAATGCTAGTTTTAAAATCAGGtgtatatgatttttttgtgtgcaaGAATATCAGTTTATTTGATTAACTGTGTTGGCCTGGTTAAATTTTCCTCCTAAGTGTCAAGTGAGTCATTTCAAATGTTGTTAAGGAGATTGAatatttggttgtttttttttttttagaagttgCGGAAGAATACGTGTACATTACAGACTACAGAAAGATGTTTCTTTTTGCACCTTTTTTAAGGGCTTTATGACATATAGTTCTCAAGGCCACAGTCAGTTTTTCAACAGTTTAGCAGACTACATTCAGCTACAGTATTCATATATACCAGTCACAGCAATGTTCATATCAGATGAGGCTACAAAAGCAGGGACAATAAGAATGTGaatgtttctttcattttctcagaGGGTTTTGTATTTacgtatttgtttttttaatctttcttttatataattgttaaaaaatattatgtttgcACTGGGTCAGAATGTTTTGAACTGTATGAGAAACCACTCGAAACTCCTTAATTCTGCACTTGATGTCTCTCAAGCAAAGAAAGTCATGTTCATGAAAGAGACCACAAAATCATCTCTGGAATTTGGATCTCTTGAAGACTGtaatttattgtgtattttcttGCCATATGACTGAAAAGGTCATTtagtatatatgtattttattaatccTCTGTAAATGTATTCTGTAATCCTCTGAGTCAGCAATTGAGAGACATGTTGAGTTAGTAATAACTTTCCAGCTTTTGGTAGTAATTATCTTCAAATAGAAgtgttttcaataaaaaaaactgtctctCAGCCATTAAATCAAAACAAGTaattggaaacacacaattcatTTCATAGAATCATTTTCCCACACTGAAGAGGACATGCATTTTGATTTTATACATGTGAATAGTTTTTGCATTTTAAGTTTTGTTCTCAAAAATGCATTTGTATTGCACATCCACACATTTCACTGagtatttttcaaaaataaaggCTTAAAACATGA

Function

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300872 lncRNA upstream 491529 12993002 ~ 12993212 (+) True G254123
TU300771 lncRNA upstream 514732 12968371 ~ 12970009 (+) False kif3b
TU300770 lncRNA upstream 514732 12968408 ~ 12970009 (+) False kif3b
TU300743 lncRNA upstream 550440 12933229 ~ 12934301 (+) True G254006
TU300744 lncRNA upstream 580375 12903970 ~ 12904366 (+) True G254007
TU301054 lncRNA downstream 19040 13507551 ~ 13507783 (+) True G254287
TU301177 lncRNA downstream 124827 13613338 ~ 13613537 (+) True G254403
TU301178 lncRNA downstream 125436 13613947 ~ 13614240 (+) True G254404
XR_004579672.1 lncRNA downstream 232773 13721284 ~ 13722885 (+) True LOC117599220
XR_003403196.2 lncRNA downstream 234854 13723365 ~ 13727382 (+) True LOC113530938
XM_034311555.1 mRNA upstream 53860 13386897 ~ 13430881 (+) False rgs19
XM_026920323.2 mRNA downstream 21077 13509588 ~ 13571301 (+) True xkr7
XM_026920625.2 mRNA downstream 86005 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA downstream 86022 13574533 ~ 13587741 (+) False ccm2l
XM_034311877.1 mRNA downstream 101954 13590465 ~ 13621861 (+) True cables2b
XM_034311876.1 mRNA downstream 101954 13590465 ~ 13621861 (+) False cables2b
XR_003403145.2 other upstream 633746 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1100167 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1341214 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1363369 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1584377 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 581717 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 581758 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 581758 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 1181293 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 1181293 14669804 ~ 14673952 (+) False G254991

Expression Profile