RNA id: XM_026920149.2


Basic Information

Item Value
RNA id XM_026920149.2
length 3224
RNA type mRNA
GC content 0.46
exon number 6
gene id avpr2aa
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18657095 ~ 18675212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagggagagcagcCTGAGCTCAAAATCAGCTGTATCAGTGCAGTAGTACCCATTTCGACTGGGACATAAGGACTTGTCCAAGCACTACACAGGAGTGCCACAATCATTTGAAGGATATCTTGATATCATCTGGAACGACAACTTGATTTGCACAGGCTTAAATCAAAACGTGACACAACGAGTTTGCTGGTTCACATTACGCTGGTGAAAGAACACACCTCTGTTCACCAATTCTGTGGAAATCACGTGTACTGCATAAGGCTGgacaggtagagagagggaGTAAAAGTGCCGGACCTGGTAACTATCAACAAACTGGGACTGGACGAGCACAAACAGCATGGAGACTGATGCAGAGGAACTAGGTTGGCATGGAACAGACCGCACAATGCCCGCATGGAACTCCTCTTCAGCTCCTTCCCGTGAAAACAGTGGACTGAATGGTTCATATGGTGGCGGATCATATTTCTGGCTGCTTCAGAACAGCTCAGCAGGGACCACTAATGCCCCACTTGCAGCCAGGGTGCGGGACATGGCACTGGCGCAGGCGGAGATTGGAGTCCTGAGCCTGGTCCTGGCGCTCACCACGCTGAGCAACAGCTTTGTTCTGTGGGTTCTGCTGCGGAGACGCAAGCACAATGCTCCCATGCACCTTTTCATGGTTAACCTCTGTGTGGCTGACTTGGTGGTGGCCTTTTTTCAGGTTCTCCCTCAGCTGGTGTGGGACATTACAGAGAAGTTCCAGGGGCCTGATGCGCTGTGCCGCTCAGTGAAATACATGCAGATCGTGGGCATGTTTGCATCCTCCTACATGATAGTGGCGATGACAGTGGATCGCCATTACGCCATATGCTGCCCCCTTCAGGCCTACAGACTGGGGGCAGTCTCACGCTGGAACACACCCATCATGGTGGCCTGGGGTCTGTCTCTTGTGCTAAGTGTACCGCAGGTGTTCATTTTCTCCAGGTCTGAAGTAGCTCCAGGGGAGTTTGAGTGTTGGGGACACTTTGCAGAGCCATGGGGTTTGAAAGCCTATGTGACATGGATGACTCTGGCTGTCTTCATCCTTCCTACCTTCATCATCACAGTGTGCCAGGTGCGAATTTTCAGGGAGATCCATGACAACATCTACCTGAAGTCGAAGCGGGTGGTGTCAGCTGACTCGAAGAAAAATGTAGTCATCTTCCGCATGCCCAGCCTGCGAAATCAGAATGACAAAacaagagaaagggagagaggaagaggatcCACTTTGAGAGATTCCCGAAGAGGATTCCATCGAAGGAACAAGAGTGACTCATCCCAGTCATACAGCAATGCCTGCAACTCCCAGCATGCACCGCAGCCAGACTGCTGTGACTGTCCCTTTCAGGACAGCCAGGGTGGAAATGAGCTacaatacagcactcagtcccCTGATGTTCtgcctcacacactcacccacacacactctcccataAATCAGAGCAACTCAGCAGCTCCTGTGAGCTCTGGGCCTCTTTCTGAAGGTGCTGCTGATTGTTATCGGACTTCCCTGGATTACTCTGAGCCCTTCGCTAAGTCACTTGAGGCCCCTATGGAGATTTGCAATCCAGTCCCTCCTGTCCGGGTTTCGTCGTCCATTTCGCGCCCCGTGACTCCTCCTCCGCCAGGTGTATCCAGAGCGATGTCCAAAACACTGAGGATGACTCTGGTCATAGTGCTGGTTTATACCTTGTGCTGGTCACCCTTCTTCACAGTGCAGCTCTGGGCTGCTTGGGACCCAAACCCACCGGATCATGgGGTGGCCTTCACTATCCTGATGCTGCTGGCCAGCTTGAACTCCTGCACGAATCCCTGGATCTACACAGCCTTCTCCAGCAGCGTCTCTCATGAACTTGTCTCCCTGTTGCATTGCCGGCCTCGTATCCCTCGTAGGGGCTCCTTACCTGAAGACTCCAGTGCCATACACACTACTAGCACCACCAAGGACTACCCGTTTTGAGCCACTCACACATGTGTGTTACATGGTAAGCAGATACACAATGTATCAGAGCCAAGCAGCAGACAAAAGAAGATGAGATATGGGGAATCAGTGAGAGATTTGTTGCTGGGAGATATTGCGCTTAGCGTAGCTGAAGCTACCTGAGTGTTTGGAATGAGCAGATTGTGGATTATACCACAGTGACCAAGTAGGACATGAATATGAACTGAAGAACATGGTCATGATGTAAACATATAAATGTTATGTCATGTCCACAAAAACATGGATATACTTGAGAGGTTTCAATCTAAACTTATGAAGAGCATATAGTTACTCCTCTAACACTACACTAAATTACATTTCAAAGAACTagaaacatatactgtatatatatgacACATTTTATCAAATCGAAGAACTCTTGAGCCAAGAGCATGTGAAGTCTGCTTAAGAATTCTTGATGGAAAGGAGGAAACCTGCCTAAGCCTGCACCCCAGACATTCCCTAGCATCATTTATCACTTTGTTGTTATTCCTTATCAGTCTTTCTGCTACAAAATCTCACTTTTGAGCTTGATGGAAAGCATCAATGAGAAGAATGAGTCATGCATGGAAACTCCATCAAAAAGACAACTTCAAAATTGTGAGAAAGTGGTGGCGATGAATGATGcacaaatgtgaaaaacaggaaatgaatggACAGAAtatggagggggaaaaaaggaaacagcaacacaacacacaagtTACACAAGTATATATACTGAAGACATCAGGGATAATGAGGTTTTATTCACAATTCACTTTACAAATATGGTACCAGTGTTGCACCATTTTAGCAAATGTAGTATTACACGGGATCTATAGCTTGACTGTTTGATGACTGTAGGAGCAGATGTAGACTGCTCCTTTCATATAATCTACATTAATTCTCTGTTTATGATATTATGGACAAAGCAGCCTTTATAAACTTAATCTAAATTAAGTTAGGTTTCAAACAagtaaaaaataacaatgtcaGAGCAACAAAAGTGCCTTAAATGTCACTGCAGCCAAAAAATGTGCAATCACCCATTTCTGAGATTCCTCCTTCCCTGGCAGTTATGTTCCCCAGTTTAATCTGTAATAGCACAAATCTCATATTCGAGGCCCATCAACTGCATCTTAGTCATGAGAAATTTCCCCCATTTACCATGTGTGAATGGATTTCCAGAGCGTTctatagattatttttattgatattataatttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304576 lncRNA downstream 3780 18653093 ~ 18653315 (-) True G257322
TU304084 lncRNA downstream 307403 18348843 ~ 18349692 (-) True G256929
TU304027 lncRNA downstream 371004 18285815 ~ 18286091 (-) False znf217
TU303854 lncRNA downstream 771516 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 866188 17790641 ~ 17790907 (-) True G256689
TU304681 lncRNA upstream 133851 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 133851 18809063 ~ 18852217 (-) False LOC113530357
TU304683 lncRNA upstream 133851 18809063 ~ 18863122 (-) False LOC113530357
XR_003403141.2 lncRNA upstream 168863 18844075 ~ 18852165 (-) False LOC113530357
TU304741 lncRNA upstream 259685 18934897 ~ 18936391 (-) True G257458
XM_034311882.1 mRNA downstream 49677 18565524 ~ 18607418 (-) True LOC117595686
XM_034311881.1 mRNA downstream 91568 18540263 ~ 18565527 (-) True plekhg5b
XM_026921196.2 mRNA downstream 125843 18509148 ~ 18531252 (-) False LOC113530839
XM_026921195.2 mRNA downstream 125843 18509148 ~ 18531252 (-) True LOC113530839
XM_026920075.2 mRNA downstream 155284 18500181 ~ 18501811 (-) True irx7
XM_026920788.2 mRNA upstream 18195 18693407 ~ 18703924 (-) True idh3g
XM_034311652.1 mRNA upstream 261365 18936577 ~ 19064473 (-) False lrp1ab
XM_034311653.1 mRNA upstream 261365 18936577 ~ 19064473 (-) True lrp1ab
XM_026920189.2 mRNA upstream 443819 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA upstream 443819 19119031 ~ 19127613 (-) True si:dkey-21c19.3
TU304189 other downstream 143838 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 356408 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 743818 17893081 ~ 17913277 (-) False kcng1
XR_004579680.1 other downstream 961497 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1825836 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579689.1 other upstream 262698 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 453252 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 695475 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 940315 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 1425787 20100999 ~ 20109210 (-) True kansl2

Expression Profile