RNA id: XM_026920153.2


Basic Information

Item Value
RNA id XM_026920153.2
length 4202
RNA type mRNA
GC content 0.47
exon number 20
gene id prkcbp1l
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14848555 ~ 14864652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTCACGGCGCGCCTCTGATCACACACAGGCCTCCAGCGCTGAGTGTTCAGAGGCGAGCCCTCCCTTGTCTAAAGGCTGAGACTGTCCTCCATGTTTCATAAGTATTGACATTACACTTTTCAGCCATGCAGCCACAGAGCTTGGCTGAGGAGGAGATCAAGACAGAGTCTGATGTGGTTGAAGGGATGGAGGTATCAGTACCACCAAAAGTTCCTGATCTAGGATCAGCAGAAGCAACAATGGCTAGTCAAAAACGGAAAGCACCCAGTCCCCCTCATTCCTCTAACGGCCATTCACCATCTGACACATCTCCCAGTGgtgtcaagaaaaaaaagaaacctggCTTAGTCACCAGCAACAATAAAGATCAGTGTGAGCTAAGACATGGTCCCTTTTACTATGTCAAGCAGCCTGCACTCACCGCAGACCCTGTTGATGTTGTGCCACAGGATGGGAGGAATGACTTCTACTGCTGGATGTGCCATCGTGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCACGCGTGTACCATGCCAAGTGCCTCAAACTGGCTGCTGAGCCTGAAGGCGACTGGTTCTGTCCAGAGTGTGAGAAAATAACAGTAGCAGAATGCATTGAGACTCAAAGCAAAGCCATGACCATGCTGAGTCTGGAACAGCTATCCTACCTGTTGAAGTTTGCCCTTCAGAAAATGAAGCAGCCAGGGACAGAGCCGTTTCAGAAACCAGTCTCTCTGGAGCAGCATCCTGACTACGCAGAGTACATCTTCAACCCAATGGACCTATGCACCTTAGAGAAGAATATCAAAAAGAAGATGTATGGCTGCACCGAGGCATTTTTGGCAGACGTGAAATGGATCTTACAcaactgtattatttataatgGAGGGAATCATAAACTTACTGCAACAGCAAAGGTTATTGTCAAGATCTGTGAACATGAGATGAATGAAATTGAGGTTTGTCCAGAGTGCTACTTGTCAGCTTGCCAAAAGAGAGACAACTGGTTCTGTGAACCATGTTCTCAGCCCCATCCACTGGTGTGGGCTAAGCTGAAAGGTTTTCCCTTCTGGCCTGCTAAAGCTCTGAGGGACAAAGATGGCCAGGTAGATGCTCGCTTCTTTGGCCAACATGACAGAGCTTGGGTGCCCATTAACAACTGCTACCTCATGTCAAAAGAGATTCCCTTCTCTGTGAAGAAGACTAAGAGCATCTTCAACAGTGCAATGCAAGAGATGGAGGTTTATGTGGAAAACGTACGCAAGAAACATGGCGTGTTTAATTACGCCCCATTCCGAACACCATATACACCAAACAACCTGTTCCAGATGCTACTGGACCCAAGTAACCCCAGGAAAGGTACAGTCAtgccagagaaacaggacaagATCAAGTTCAACTTTGACATGACGGCATCTCCCAGGACATCCCTGGGCAAGAGTGTGGGACACAGGATGAGTGACATGCCCAGGTCTCCAATGAGTACTAATTCCTCAGTCCACACAGGGTCAGACCTCGAGCAGGATGCATCAGAGAAAGGAACAAGAATCCCATCTAGCCACTACAGTACAGGGGAAGACTCTATGGACTGCACAGCATCACCAGCATGTCTGAAGTCCACAGGTAGCCCAAAACCCATCCTACCAACACATCTTAAACAGGAGAGAACGCAGAATACAGCCAGCATCCTCAACCTAAATCTTGaCCGCATTAAGGCAGAAATGGACCTAAAGGAGCTGAGTGAGACTgtacagcaacagcagcagcaaggCCCATCTGTACTCCTTACCTCACCAAAGAAACCCACCAGAAGTCTGGATAAGACCATAGAGAGCTGCAAGGCCCAACTAGGCATTGATGAAATCTCTGAGGATGTGTACCAAGGTGTGGATCACAGTGATTCTGATGATACTGACAAGTCTGACTCCAGCGACAGCGAGTATGCGAGCgaagaggagcaggagctgAAAAACGCAGCAAAGAATGAAGACCATGAGGATGCcgtctttaaaaacaaaaagagaccCAGACCTGCATCTTCACAACCGCAAAACAATAAGAACCAGTCTCAAAACGTGACTGAGAAGGTGGCCTCGGAACCTCCCCTAAAAAAGAAAGCCAGTGGTGTTTCAGAGAAGGAAGCCCAGGAAAAGCCCAGGGCAAACCAACAGACACcgtcacagagagagagaccttcAGCTGGGCATGAGGGAAAGGCTGGAGCTGTGGATGCAGATTCCGACTCGGAAAGAGAACTTGTGATCGACCTTGGTGAGGAacagggagggaaagagaggaagaaaccAAAGAGAGAGTCTTCATCAATCTCCAACTCTATAACCAAAGACAATGCAGCCGGCAAAACTGAAGGAAAGGCTCAGGCTGCTGCCAGCCCTTCAGTCTCTCCATCCACAGTACCCTCTGCTTCATCCTCCAACCCCAGCACAAGAGATTTAACTCAGCCAGTCTTAAAGGCACCAAACACCGCCTCTGCCCCACCCTTCACCTCCGTCAGCACCACCTCTGTACTAGCAACTGCTTCTGCAACAAATTCCTCTACGACAACTGTGGTAAAGAAACAGCGCCCTCTGCTGCCCAAGGAGACAGCACAGTCTGGTCAGGCATCTGTGGTTTGGAACCAGACTGGGAATAAGCTCCAGACATCCTCTCCAAAGTGGCAACTGCAGAAGGTTCAGAAGCAGCAACATGGCGCACAGTCTCAAAGCCCAGTGGCTTCCAGCAATGCCAGCACCCGCTACCAGACCAGGCAGTCTGTTAAAGCTGTTCAGCAAAAGGATCCCTTGTCTGGGTCCTCTAGTTCAGTCCTAGCTGGGGACTTCCTCACCCCGCCTGCCTCTGCTGATGTAGCAGCTGATATTGCCAAGTACACATCTAAAATAATGGATGCTATTAAAGGAACAATGACCGAGATATACAACGACCTTTCCAAAAGCACAACAGGAAACACTATTGCTGAGATACGAAGGTTAAGGATTGAGATCGAGAAGCTCCAGTGGCTGCATCAGCAAGAGCTTTCAGAGATGAAACATAATCTGGAACTGACCATGGCGGAGATGAGGCAGAGTCTGgagcaagagagggagaggctTGTGTCGGAGGTAAAGAAGCAGATGGAGGTGGAGAAACAGCAGGCTGTGGATGAAACGAAGAAGAAGCAGTGGTGTGCCAACTGTAAGAAGGAGGCCATTTTCTACTGCTGTTGGAATACCAGCTACTGTGATTATCCCTGCCAACAAGCGCACTGGCCTGAACACATGAAATCCTGCACGCAATCAGCCACAGCATCTCAGCAAGAGCCAGAGGAAGAGGCCTCTGCGGTTCCATTAAAAACCTCAGGACAATCACCTAAAGCCCAGCATTCACCTGCAGCCAACAGAAGTTCACCAACACACAAAACCCCCTCGCCTTCATCAGACAACACTAAAGCAAGCGCCACAGTCTCTGTGTCCTAACCAGAACTTCTCCATCATTTCTCCACGGTCACCAACATGGATGCTTCTGGACTGGGGTCTGCAAGTTGtgcttttctcttcttcttcttcttcttcttcttgtcaaAGCTCAAAGCAAAGACATATTAAACTTACGCTCCTCACCTGCCCAGTTCACTACACCTGAAGATGTAAGAAagtggttaattttttttatacatttctgagtcatttaatgtttttttttttttagtctacaTAAAATTGATTTGTACAAAGGCTGAAAGTTTCATATAAAATATGCTAAtgtaatactgtttttttttacacacagttGAGTTTTATACGGTGCAGATCAAATGAATTTGTCTGCtcagtaaattttttttatgtacccGCTGCACTTACCGGTGCCTCCAGAGAGATGgttgctttacattttttttagatggTGGATCTTTTGAAACATGGTGGGATTTATTAATTCGCAACATGTTAAGGTTTGATTCTCACTACATCACCCTTCAAAGACATTCTGTGTAGCCATCTTACTGAGGTCATTCATCCTGCAGATATTGCTTGATTTAAAGCTGACGAAAGCAGAGTGATTGAGGTTGTATTTGTATTTCACTTCAACTTTTCACTTGTTtacatattgtaaataattaaagaacTAAAAGGAGACAACTATctgtaagaaaaataaaatcaactcCCTTCTGAAATTAAAGTCATGAGTTGTCTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301929 lncRNA upstream 142034 14705697 ~ 14706521 (+) True G255058
TU301928 lncRNA upstream 143019 14705268 ~ 14705536 (+) True G255057
TU301850 lncRNA upstream 174603 14622317 ~ 14673952 (+) False G254991
TU302078 lncRNA downstream 14260 14878912 ~ 14879327 (+) True G255189
TU302114 lncRNA downstream 132173 14996825 ~ 15002630 (+) True G255209
TU302099 lncRNA downstream 189457 15054109 ~ 15054471 (+) True G255198
TU302123 lncRNA downstream 229161 15093813 ~ 15095619 (+) True G255218
XR_004579741.1 lncRNA downstream 310932 15175584 ~ 15177222 (+) True LOC117599280
XM_026920272.2 mRNA upstream 14328 14825582 ~ 14834227 (+) True si:ch211-220i18.4
XM_026921036.2 mRNA upstream 26397 14754553 ~ 14822158 (+) True plxnb1a
XM_026920806.2 mRNA upstream 112573 14731594 ~ 14735982 (+) True LOC113530635
XM_026920460.2 mRNA upstream 144475 14699254 ~ 14704080 (+) True krt8
XM_034311902.1 mRNA upstream 274245 14531372 ~ 14574310 (+) False foxp1a
XM_026920805.2 mRNA downstream 3640 14868292 ~ 14876903 (+) True mapre1b
XM_034311944.1 mRNA downstream 34978 14899630 ~ 14972991 (+) True lama5
XM_034311945.1 mRNA downstream 34978 14899630 ~ 14972991 (+) False lama5
XM_026920486.2 mRNA downstream 143469 15008121 ~ 15052391 (+) True soga1
XM_026920484.2 mRNA downstream 143475 15008127 ~ 15052391 (+) False soga1
TU301848 other upstream 174603 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 174603 14669804 ~ 14673952 (+) False G254991
TU301462 other upstream 776339 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 776339 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 776397 14070228 ~ 14072158 (+) False wfdc2
TU302131 other downstream 252460 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 252460 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1345998 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 1498897 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 1508590 16373242 ~ 16396212 (+) False LOC113530371

Expression Profile