RNA id: XM_026920159.2


Basic Information

Item Value
RNA id XM_026920159.2
length 3878
RNA type mRNA
GC content 0.42
exon number 5
gene id slc16a7
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14840288 ~ 14847015 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGGATGAATCTGCCACTACCTTTTTTGGAATTGTGTCCATGTTGcattattttggagaaaattccGTTTGTTTATACGTGTAGTAGATGAGTTTTCCTGATCGGCGTGATGACGTTTAATGTCCCCGACACCGTCTTTAGTCCCATTTAGCCACTTTTTAGCAACCACCTTTTTCAAGACACGTGAAAAGCTTAAAAAATCATGAGTGGGGTGTTGcttgtgtattttatgtcatagaATAAAACGTGAAAATATTTTGAGCTTGTGTTAATCACAGAACTTATTTCAGGCATTTAACCAAAAACCCATTCAAAAAACCCATTGAGTTGTGGACAATGGGACCGGAAGTGCGAAAATGCGAACTAATTTCCGGGTTTTAGGACTCATTAGGACTTTATTTACCTTTTGTAATTGTAGGCATGCTGAATTAGTTAAAAATCAGCCAGCAACAAGGGAGAGGTGGAAGTGCAGGAGCTGATAAGGTCTGGTGGTGGGGAGAGAGCGCGTGTGAGAGGCAGGACAGGTGAACTGTCTCAACTCCACACACAGTCCCCACAATGCCCCCCGCAGCTGCAGCTGATCTAGGCTACACTCCTCCTGATGGAGGTTGGGGCTGGGCAGTGGTTTTTGGATCATTCGTGTCCATCGGCTTTTCATATGCCTTCCCCAAATCCCTTACCATCTACTTCAAGGAAATCCAGGAGTATTTCTCCATCTCCTACAGTGAGATTGCATGGGTCTCTTCCATCATGCTTGCTACCATGTATGCTGCAGGACCGTTGAGCAGCATACTCGTCAATCGTTATGGGAGCAGGCCGGTGGTCATTACTGGTGGCCTAATGGCTGGGGTCTCCATGATTGCTGCTTCTTTTGGCACAAGCATCATACATCTGTACATATGTGTAGGAGTCATTGGAGgtcttgGCCTTGCCTTTAATCTGCAGCCAGCCCTGACCATTATTGGGAAATACTTCCTTGTGAGACGACCCATAGCAAATGGTTTGGCCATGGCAGGAAGTCCAGTATTTTTGTCCACTCTGGCTCCACTCAACCAGTTTCTGTTTGACAACTTTGGCTGGCAAGGAAGTTTCTTCATCTTGGGAGCCATACTATTCAACTGCTGTGTGGCAGGAGCACTGATGAGGCCCATTAAGATAAGAAAAAAGCCTTCGAAAAATCAAAACAGTGATGGCAATGGAGCAGGAACAGAGAATAGTGATTCCCAGAAAGTTAGTTTAGTGAAAGGAAAGCAACAGACAAAGCAGACAGGATGTGCATCAAATGTGAACAAATTCATTGACCTCTCACTCTTCAAGCACCGTGGTTACCTTATATACCTGGTGGGGAATGTTGTGATGTTCTTTGGGTTCTTTGCTCCAGTCGTGTTCTTGGCGCCCTATGCCAAGCACCAGGGGATTGATGAGTATTCTGCAGCCTTCCTGCTCTCCATATTTGCCCTGGTAGACATGGTGGCTCGGCCTACGACTGGCCTAGTGGCCAACACAAAATGGATCCGTCCCAGGATTCAATACTTCTTCAGCTTTTCTGTGGCATATAATGGGGTGTGTCATCTGGCATGCCCTCTGTTGCCCGGGTATGCAGGTCTGGTGGTATATGCAGTCTTCTTTGGGATGGCGTTTGGAATGCTGTGTGCACTGCTTTTTGAGGTGCTAATGGATTTGGTGGGAGCACAACGATTCTCCAGTGCAGTTGGACTTGCCACTATTATAGAATGTGCCCCTGTTCTTCTTGGGCCCCCAATTTCCGGTGCACTGGTTGATATCTTCATGGACTATAAGTACATGTACTTTGCATGTGGCATAATGATGCTGATTCCTGGACTTTTCCTCttcattatgaatttttttaactaCAGATGGTTGGAGCAGGAacagcagaagcagaagcaggaTGATCTGCAGATTGGTTCAGCCAAAGAACTTGCTGCTATAGAGGAGGCTAATGATATTGAGCAAGACATCAAATTCAGTCAGGAAGAATAATTTATGGACTTTGCTAGCAAAGAAGCGTAATGCTATGCACTTAGATTTTAAGTTGAAAAAGCGTACATCCATATATTTAGTTAAAAATAGGGTATTGTTATATACCCTATAATGCTGCATAAGATTagtattacatttatatttgtcaTGGACCAATCATCCCTGAGTGTTACACCTAAAGTCTTACTGTTTAAACTCTCCACTTACTCAGTGTGAAACCTTGCTCCTTACCATGAGCTTATCTTTCACACTTCTGTCCTAGCTTTTTACCATATTAACAGTGTGTATTTAGGGCCCAAGCACTGAAAGTGTGCAGGGCTCTATTGTTTTCCTAAggattattatttctattataattattttttcgGGGTTACGGGGGCTAAggattattatttctattatgattattttttcgGGGTTTCGGGGGCTTTTGGGGCCTTTAACATGCTCAAAAACTCATGAAATCTGGCACACATGTCAGACTCTACTACCATTAGGCCCTGGCAAAGGGTAGCGCATGGCGTGGGGGGGTCTCTGCAGCGCCCCCTTTTACACAGTACATAATCTTGGTGCATATTTCGTACGTACTTGTACGTATATGTATGAAACTAAGTACATAAATTGTTCTCATCTACCCGAACAACTTTCGTGCTGAAAATCATTAGCTCCGCCCAACAGGAAGTtggccattttggattttgtgaaagtgcttgtggtgaacttttaaatactcctcctaGGGAGATTCACATGATTGTCACCAAACTTGGTCAACATTATGCCAAGACATTGACTATTTTGAGTCATGGTCATAGTGCCACCAACTGGCAGCAACAAACTTACAACGGACTATGCAATAATCCTCTTATATTTACCCGAATCGCCCCAGTCTTGGTCAGAATAATGTCAATACATGGCTGATGTAAAACTGTGAAAGGATTTTTGATGTCTTAGTGTTGTCGTGGTATCGCATCAAACATTAATACTCTTTTGGGGTGTTTTTGAGGTTCTTAGCatgcttaaaatttcattaaagtCGGCACACAGGTCAGAGTTAGCGTTAGACGACCGTTAGGCGTGGGCGAAAGCTAAGTTATGGGTGTGGAGGGGGGCTCTGTAGCGATCCCTTTTGACTAAAGTGGTGGGGTCAGTTTCACACACAGTTACTAAACTCTGTACATATATTGTTCTCATTAAGCCAGACAACTTTCCAACTGACAGTCTTTAGCTCCGCCCAACAGGAAGTaggtcattttggatttaatgtggattttttgaaatgcagtctttttttttgaaaagacaTCATCTACTATATAgctataattacatttaatctttGCATAGCTGTTACGTTGTAATtcaaaatgaatcaaatcaCAAACTAGGAGAAACGCACATAAACAGAGCTATGTTGCACCCCTTTAAATTCATGTGACCACTACATATTACTtcactacaattaattaatggctaacattaattattatgtttattataatttttttaaataattttttttattaatatttattataaaattaaggATAACAACATATGTCTCTTATCTTCTTCATGCATTGTTTAAGCTGTGTATAAGCTGTATGTTTGGACATGGAACCTGTTGTAAAGCCTTAGACCTGGGCTTAACCTAACACATCAGTGCAAAACAAGTAACTCTACAGCGCTCGCTTCACTATGAATTGTTTTTGTACACCCACCGGGTGGCGATGGCATCTTATTGCTTGGGCCCGtcatcgctgcttgcagctatatttgttttgttgctcCTATCTGTTGTCCTTGCCTTTTGATCTtctgtttctgatttttttgttgcattaaaCCTCTTGCGTAAGTGTTCTACTTGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301946 lncRNA downstream 136018 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA downstream 136018 14700224 ~ 14704270 (-) True G255071
TU301888 lncRNA downstream 307700 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 1139883 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 1143668 13692797 ~ 13696620 (-) True G254600
TU302215 lncRNA upstream 28629 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 333371 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 335142 15182157 ~ 15185972 (-) True G255385
TU302304 lncRNA upstream 335142 15182157 ~ 15227960 (-) False G255385
TU302326 lncRNA upstream 411470 15258485 ~ 15260105 (-) False LOC113530775
XM_026920809.2 mRNA downstream 91693 14741169 ~ 14748595 (-) False zgc:171775
XM_026920808.2 mRNA downstream 91838 14741169 ~ 14748450 (-) True zgc:171775
XM_026920738.2 mRNA downstream 166322 14669816 ~ 14673966 (-) True LOC113530599
XM_026920791.2 mRNA downstream 193983 14624061 ~ 14646305 (-) True eif4ba
XM_026920792.2 mRNA downstream 194043 14624061 ~ 14646245 (-) False eif4ba
XM_026920171.2 mRNA upstream 126001 14973016 ~ 14979288 (-) False adrm1
XM_026920169.2 mRNA upstream 126001 14973016 ~ 14979288 (-) True adrm1
XM_026920902.2 mRNA upstream 134331 14981346 ~ 15002677 (-) True osbpl2b
XM_034311947.1 mRNA upstream 134331 14981346 ~ 14997524 (-) False osbpl2b
XM_026920118.2 mRNA upstream 246782 15093797 ~ 15116626 (-) False acss2
TU301948 other downstream 136018 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 689707 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 640742 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 868020 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1800808 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1966369 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2829550 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile