RNA id: XM_026920171.2


Basic Information

Item Value
RNA id XM_026920171.2
length 1492
RNA type mRNA
GC content 0.52
exon number 10
gene id adrm1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14973016 ~ 14979288 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAACCGTCGTCCTATCCGGAGCGTCCCGGAAGTTGTGCTCTGGAGTCAGTCTAGTCGGCTTGAGCAATTGAACTGAGAATTTCACTTCGGGAATACATGAAACACAGCTAATTTAAAGGATGTCTTCTGGAGCACTCTTTCCCAGTCTGGTTTCAGGCTCACGTAGCTCATCCAGCAAATACCTGGTGGAGTTCCGAGCGGGTAAAATGACCCTGAAGGGCAGCACGGTGACTCCGGACAAGCGCAAAGGCACTGTCTACATCCAGCAGACAGACGACTCGCTTATCCATTTCTGCTGGAAGGACAGAACCACTGGAAATGTGGATGATGATTTGATCATCTTCCCTGATGACTGCGAGTTTAAGAGGGTGAGCCAGTGCACCACTGGACGAGTGTATGTTCTTAAATTCAAGGCAGGATCCAAAAGGCTCTTCTTTTGGATGCAGGAGCCCAAAACGGACAAAGATGAGGAGTACTGTCGTAAAGTGAACGAGTATCTGAACAACCCACCAATACCAGGGTCTATGGGCAGCGGGGGCAGTGGCGGTCACGAGCTGTCTGCACTAGGAGAAGGTGGCCTGCAAAACCTCCTGGGCAACATGAGCCATAATCAACTTATGCAACTGATTGGCCCAACAGGACTGGGTGGACTTGgtgggCTTGGTGCTCTTGCAGGTCCAGGTTTGGCCAGTCTGTTGGGAAGTGGTGGTCCAGCCAGTAGCAGCTCAACCTCCAGCTCCCGCAGCCAGTCAGCAGCTGCCACACCCTCCTCCGGATCTGCCGCTCGTCTGAGCTCTACTCAGGCTCCCACCACCCCACTGACCCCTGCTGCGACCTCTACAGACTCTCCAACCATGACCCCCACGACCCCAGCCTCCCAAACCTCTTCCCTGGCAGCAGGCGTGGGGAGTCCAACACAGCCCATCCAGCTGAGCGACCTGCAGAGCATCTTAGCCACAATGAACGTGCCTGCCATGAGTGCAGAGGGACAGGGAGTGGACCTGGCGAGTGTGTTGACTCCTGATATTATGGCTCCTATTTTGGTGAATCCTGATGTACAGCAGAGGCTCCTGCCATACCTGCCTTCAGGAGAGTCACTACCACAGAGTGCTGAGGAAATCCAAAACACACTCACCTCGCCACAGTTTCAGCAGGCGATGAGCATGTTCAGCAGTGCACTAGCGTCTGGGCAGCTTGGTCCTCTCATGAACCAGTTTGGACTGCCCTCAGAAGCAGTGGAGGCAGCTAACAAAGGGGatgtGGAGGCTTTTGCCAAGGCCATGGAGAACAGCAGTGGAAAGACGGATGAGTCCGGTGAATCCAAAGATAagaaggatgatgatgaggacaTGAGTCTGGACTAGTGAAACAAGTCAGTTTATCAATCCAGCTACTGTCTGTTGTTAAAGAACTGTCCAGATCCAAGAAGTATGCCTGTATGTTTCATAAGTCTGATGTTGCACAATTAAAGTGATTACTCTGAGTCTTTGA

Function

GO:

id name namespace
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302215 lncRNA downstream 94510 14875644 ~ 14878506 (-) True G255306
TU301946 lncRNA downstream 268746 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA downstream 268746 14700224 ~ 14704270 (-) True G255071
TU301888 lncRNA downstream 440428 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 1272611 13700009 ~ 13700405 (-) True G254567
TU302322 lncRNA upstream 201098 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 202869 15182157 ~ 15185972 (-) True G255385
TU302304 lncRNA upstream 202869 15182157 ~ 15227960 (-) False G255385
TU302326 lncRNA upstream 279197 15258485 ~ 15260105 (-) False LOC113530775
TU302361 lncRNA upstream 352838 15332126 ~ 15332451 (-) True G255435
XM_026920159.2 mRNA downstream 126001 14840288 ~ 14847015 (-) True slc16a7
XM_026920809.2 mRNA downstream 224421 14741169 ~ 14748595 (-) False zgc:171775
XM_026920808.2 mRNA downstream 224566 14741169 ~ 14748450 (-) True zgc:171775
XM_026920738.2 mRNA downstream 299050 14669816 ~ 14673966 (-) True LOC113530599
XM_026920791.2 mRNA downstream 326711 14624061 ~ 14646305 (-) True eif4ba
XM_026920902.2 mRNA upstream 2058 14981346 ~ 15002677 (-) True osbpl2b
XM_034311947.1 mRNA upstream 2058 14981346 ~ 14997524 (-) False osbpl2b
XM_026920118.2 mRNA upstream 114509 15093797 ~ 15116626 (-) False acss2
XM_026920116.2 mRNA upstream 114509 15093797 ~ 15116626 (-) False acss2
XM_026920115.2 mRNA upstream 114509 15093797 ~ 15116626 (-) True acss2
TU301948 other downstream 268746 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 822435 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 508469 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 735747 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1668535 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1834096 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2697277 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile