RNA id: XM_026920173.2


Basic Information

Item Value
RNA id XM_026920173.2
length 1772
RNA type mRNA
GC content 0.47
exon number 8
gene id sla2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13625898 ~ 13632021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTCAGTGTGTTTTTCATATCTGAGAACCACAGAAGGATTGACAGTTTCTTAGAGCACATACATCTTTCTACTGCAGGCTTCATCAAACACTGCCTTCAATCGAGGCCTGATCTTCAAGTCACCTTGTTTCTCTCACTTCACACTCTTCTACCAATCAGAAACACAGCTACTCATCGCAGTGCGTGTTCTTGACGTGTCTACAAGGGCAGGAGTGAGTTGtttttgagacttttttttttttggttaaactcAGTCATAAAAGAGCCAAACGGATGATCTGCACCCACTGAGGAGAAACAACTGGTATCACAGCTTGGCAGAGAAATGAGTCTGCAGTTCTGCTGATCAGGAGCATCATGGGCAGCAGGCCAAGTAAAGGGAGGCGTAGCAGTATCCCTCAAACACCCCTGCTGGATTTGGATGAGCCCATGGATGGCAGGTATGTAGTGGTTGCTCTGTATAACTACCCGGCAGGAGGTCCCTCCGATTGCACTATCAGATTTGGGGAGAGACTCAACGTGCTTTCTGAtgaaggCGAGTGGTGGAGAGTGAGTTCCTCAGCTACAGGAGTCGTGAGCTACATCCCCAGCAGCTACACATGTAAAGTGTTTAACAGGTGGCAGTTTGTAGGTCTCAGTAAACAGAAGGCAGAAGAGCTGCTTCTCAGCCCTCAGAATCACCCTGGCTCCTTTCTTGTTAGAGAGAGCCAGACCATACCTGgtgcTCACTCACTCTCAGTGCGACTTGAGCGCCAGTCCATCAAACACTATCGTATCAATACTATAGAGAACGGCTGGCACTACATCTCCCCCCGCCTCACCttccccactctcacacacctcgTCGAGCACTACTctgTGTCTGATGGCCTGTGCTGTTTGCTGAAAGAGCCATGCTTCATTCAAGGCTCCAACAACGTTCCGGTTGTAAGCGGCCCTCCTCCTATATCAGTCAGAAAACCCACCATCAACTGGAAAGATGTCAACAGctccATGATCTTTGGGCCCCAAAAGGAAGGTGTGGAAGAGTCGCTTGTCAGTGAGGGGCTGAAGGAGTCCATTAATTCCTATCTTTACATGACTGAAAATGGAGAATGTAACGAATGTGCTGGAAACTGGGACACGTGAGCTTGCGGGACATttgaaagaaaggagaagagtTAAGGCTGAGGCTGACGGCCAGATTTTACTGTTCCTCAGTTCCCCCTGGGACCTGCTGAGCtttgcactgacacacacagatcactGGAAAGGCTCGGACATGGACAGTACAGGAGTGTAGTAAAGACATCGGTTCAGTAGTAGAGCAGAACATTTGAAAATGAAGCGGCAGCACTTTCCTGCAGTCCATGTCATTCTCTTTTAAGTCATCACTCATCTTCCAGTGTGGGTGATGGAGATTTTAGCGTCACAGATTTCTGTGTGGACTTGTTCCTGAGGATGTGAacgaaaaaagaaagagagaaacagaagtgACCGTGGGAGGCTCAAAGCAGTGCGTGCAGCCATTTGTGCCGCTCAAACACTTCTGGAACTTTCTCAGTTTTCATGGACTAGAGAGAGGCGAGGCCATGATGGGAGACGCGAAACCTTTATTTCttgctgattttttaaaaaaaaggttatattGAACTGTTGgttcttatttaacattttaaaagttaaGAGTACAGTACATCTGTAAATTCACTATGTGCTTTTTGTTGATTGTGTTCCAACACTGCAGTCACATGTTATTTAATGCTGCTTCAAGAAAAAGCTTAAGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301384 lncRNA downstream 11235 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 34928 13590500 ~ 13590970 (-) True G254568
TU301036 lncRNA downstream 137405 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA downstream 160683 13464191 ~ 13465215 (-) True LOC117599295
TU300928 lncRNA downstream 374545 13251140 ~ 13251353 (-) False oprl1
TU301397 lncRNA upstream 32872 13664893 ~ 13665473 (-) True G254599
TU301398 lncRNA upstream 60776 13692797 ~ 13696620 (-) True G254600
TU301364 lncRNA upstream 67988 13700009 ~ 13700405 (-) True G254567
TU301888 lncRNA upstream 898804 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 1068203 14700224 ~ 14704270 (-) False G255071
XM_026921347.2 mRNA downstream 174524 13440784 ~ 13451374 (-) True tcea2
XM_026920113.2 mRNA downstream 342013 13251333 ~ 13283885 (-) True oprl1
XM_034311548.1 mRNA downstream 368172 13251332 ~ 13257726 (-) False oprl1
XM_034312111.1 mRNA downstream 597011 12995420 ~ 13028887 (-) False myt1b
XM_026920609.2 mRNA upstream 3791 13635812 ~ 13699042 (-) False ndrg3b
XM_026920605.2 mRNA upstream 3791 13635812 ~ 13699042 (-) False ndrg3b
XM_026920607.2 mRNA upstream 3791 13635812 ~ 13699042 (-) False ndrg3b
XM_026920603.2 mRNA upstream 3791 13635812 ~ 13699042 (-) False ndrg3b
XM_034311624.1 mRNA upstream 3791 13635812 ~ 13699028 (-) False ndrg3b
TU300417 other downstream 1466538 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1484725 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1732896 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1733478 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2057368 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 497195 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 497195 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 497195 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 497195 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1067251 14699272 ~ 14704270 (-) False G255071

Expression Profile