RNA id: XM_026920180.2


Basic Information

Item Value
RNA id XM_026920180.2
length 4192
RNA type mRNA
GC content 0.47
exon number 16
gene id dnajc16
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21074213 ~ 21083989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAGGGTAGTACGCAGCGCGCGCTCCAGACAGCATCCGAGGCAGCCGGGAGGCAGCGGGATGAGCAGCAAAGATGTGAACAGATGTTGAACATTTGAGCAACAAAATGCGATTTTTGCGGTCCGAGCGGATTTGACAGGCTTCTTAAAACACAGGGCTGAACCCGAATTTCTTCCTGGTgcgttttttaaaaagaaaaatcgaCGTAGTTTAACAGTGTAGTACGTGTGTCTGGGATAACGCTAAAACCGGTCACAGATTTGGGACGATGTCAGTGCTGTTAGACTGACTGCTGAAGTCATGGCTAAAACCACGATGCTGTGCCTGAATCTTCACTCTATGCTGATCCTCTGCGTCCTCTTGGCTGGAGCTCAGGGAGACGGTGCAGAATTTGACCCCTACAAGATCCTGGGGGTCACTAAGAGTGCAAGTCAGGCCGAAATCAAGAAGGTGTATAAACGCCTTGCTAAAGAATGGCATCCAGACAAAAACAGGAGCCCAGAAGCAGAAGACATGTTCATTAAGATCACCAAGTCCTATGAGATCCTATccaatgaagaaaaaagagccAATTACGATCGCTACAAGCAGACCAACTCCCAGCCTTACGGGCCTCAAGGCTTCCGTCACTTCCACGACAACTTCTACTTCGACGAGTCCTTCTTCAACTTCCCCTTTAATAGCAAGGGCAGCCGTGATGCCACTGACAGCAAGTACACGCTGCACTACAAACAGTATGTCAACGAAGTCGTATCTGACAGCTTCAAAAGACCGTATCTGATCAAGATCACCTCAGACTGGTGCTTCAGCTGCGTCCACATGGATCCCGTATGGAGGGAGGCCGTGCAGGAGCTCGAGCCTCTCGGTGTAGGAATAGGTGTGGTTGATGTCGGCTATGAGAGACGCTTGGCGAATCATCTGGGCGCTCACCGCACTCCATCCATACTCGGCGTCATCAACGGAAAAGTGACTTTCTTTAACTATGCTCTGGCCAAAGAGCACCTCATGCAGTTTGTGGAGGACCTGCTCCCTCAGAGACTGGTCGAGAAGGTCACTGACCGGAATGACCGTGACTTTCTGAAGAGCTGGTATGATGTTAACAAGCCCCACGTTCTGCTTTTTGACCAAGTGCCTGCGGTTCCTCTGCTGTATAAGCTGACTGCGTTTGCCTATAAGGACTATGTGCAGTTTGGCTACGTGGACCAGGGTCTGTCTGAGACGGCCAACCTGCTCAAGCAGTACAACATCAACACGTACGCTCCAACCATGCTCGTCTTCAAGGAGAACACAGATAAACCGGCCGACATTATACAGGCTAAagggatgaaaaaacaaataatcgATGAATTCATCTCCAACAACAAATTTCTTCTTGCTCCTCGTCTGGTAAACCAGAAGGTCTTTGATGAGCTTTGCCCCGTCAAGCAGTTCCATCGGCGCAGAAAATACTGTGTTCTGCTTATCACTGGTGAGGAGGAAGTCTTTGTCTCAGGAAACAAAGCTTTCTTGTCTCTGGCCTCTGCGAACACCGAGGAGGTTCTCCGCTTTGCTTATGTGTACCAACGCCAGCAGCAGCCTCTGTGTTCTGTGCTGCTGAAGAACAGAGACACTCCACCACAGgTGGTGATCCTGGAGCGGCGTAACGGGGCCGGTAAGGTGGTCTACAAGCCCATCCAGGGCGGCTGGAACGGCAGCGAGGAGGACAAACACAGGctgctggaggagctggagcgGCTGCGGAAAGACCCCTCCATCCTTACCCATGATGCCATGCTGCCTGAGCTCAATAACGAGTTCGCTTCAATGTTTTTAATCAGATGGATTTATGCAGCTTATGACTACTTGTCTGAAATTATTGATGATGTTCTCCACAATAATTGGCGTGAAATGATGCCTCTGCTGTCTCTGATATTCTCTGCGCTGTTCATCCTGTTTGGCACGGTGATTATTCAGGCTTTCAGTGACTCTGGTGAGGAGAAACAGACAAAACCAAAGGCAAAAGAAGCAGCAAAGACCCAGAATGGATCACCAAGCACTGCCAACACTTCCAGCCGTCCACCGAAGAAGAACTTCGTGGAGGTGACTGAGTTAACGGACATCACTTACACCAGTAATCTGGTAAAGCTGAGACCAGGCCATATCAACGTGGTGCTGGTGCTTACAGACGCAACCAAAAACATTCTGCTCAGCAAGTTCGCCAAGGAGGTTTACTCCTTCACCGGGAGCCAGACGCTACATTTCTCCTTCCTGAACGTGGACAAGCACAACGAGTGGATGTCCACGCTGCTGGAATACGCCCAGGACGCCATGCAGCTGGAGgcggacgaggaggaggaggccaGCAACCGCAAGACAGACTACACGGGCTACGTGCTGGCTCTCAACGGTCATAAGAAGTACCTGTGTCTGTTCAAGCCAGTGTACACGGGCGAGGACGCTAACAGCAGGCCGGAGGAGGAGGCGGGGAGCTCCAGATCCAGATCAAGCTCCAGAGACGAGCACCAGCACAGGAAAGGAGGCGCACGCTCGCGCTCCACCACTCTCCACATCCACCACAAACTGGACCGCCTGGGCCTGTGGATGGAGCGGCTGATGGAGGGCACGCTACCTCGCTACTACATCccggcctggcctggcctggacAAGATCACGGTCAATAAGTAGAGCTGGGAATCCTAGCATGCTGTTGAACAGAGACAGTGTTGGTTCTTTGGGAAGAGTTTCTCATCGCTCCCATTGCAGTGTGTCTCCGGGTGGCGCTGTAGGCGGACTTTGTGACCTCAGAGCTCAGACTTTGATCTTACACAGATGCTGTAAATGACCCGAGTCTAATAGTAGCTCCATTTAACTATGATGCTGCGCCATAACTACTGAATGCTGCTCCAGTCGTtactttaaaggtacaataaATAGGGATGTCCATCAATAGATGGCCTAAAATGACAGAATAccaggaaaaatccaccctcaATGATATGCATGTTAATCTTTAATTATAACGTAATATTCAGTGACGTCTAAGACGTCTGAGTTAACATTCTTTCATCAGTGTTAACGATTTCCTactttacccacaatgccactcGACTTGCTGCTGATAGTGGCGCAGTGGGATTTatcccttgcttcatctctacttaCAGAGAGgaatgcagcggcgctttagtatTTTAGTCCGTCAGGCTCTCTTGCCTcgtcatctgtacactctgctcaaacagatcagcttccaaagcttcagtgTTCCTGGTAATACTGTCATAAACACCTTCTCAGTCTACACTCACACATCGCTGGAAAGTGCTGATTGGCACTTGAttgcttttcttgtttttagtAGCTAACGGCGTTAAGCGTTATCCCTTATGTCTGAGATCGGTCAAAGTTTAGTCTCCagttaaacaccattgtaactgcgctagcaataacAGTGTCCTCCTGTGATGTCAGCGtggcaccagaatcactaaagacatcacaaatatttcaatataaacatatttaatgtgtttcagggtggagatTTCCTTAAGACATGGTGATATGGAGTGAAAGCTTACTGTAGTCGGAAAATGCcttatatataataatcttGCTCACCTTTAACAGCTAATGAGGTGAAATCGAGGATTTCAGTTGATATAAGTCTTAACCTGATTCCCTGCCAGGCACACTACAGTCACTTTCTCCTGTTACAAGTagtatgaatttaaaaaaaaaaactgtaataatggGAAGCTTtccttttacaattttaatttaaacacctaaacagcaaaatatttaataataattgttagtATTTTTAAGAATTATATCAGTATTAAGCATaagtgtacatatatacattctgTCCTGAACAGAAGGATATGGAAGACATTGTCTTGCCTGTGCAATAAGACTACTTTGCCTTGAacctgtttctttaaaaaaaaaaaaaaagaaatgaaatatctGTATAATGAAGTGCTACACAGTGATCCCTGCTGTAGTTTGCGTTCCTGACTGCCTCAGGCATTTCAGCATGGAATCAGATGTAGTCCATCCAGTAATATTAACCAGtcctgtgtgttcctgtgtcTACAGTTttctaaatgaaaatgagaattTTTCTAAAATTAACATGATTAAATTCTGTAAGGAGAATTAATTTGAGTGAAATTAACTATAGcacctttcttccttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305999 lncRNA downstream 97952 20973397 ~ 20976261 (-) True camk2n1b
TU305993 lncRNA downstream 120361 20953626 ~ 20953852 (-) True G258437
TU305980 lncRNA downstream 171456 20901278 ~ 20902757 (-) True G258427
TU305972 lncRNA downstream 190118 20883799 ~ 20884095 (-) True G258424
TU305953 lncRNA downstream 297504 20776149 ~ 20776709 (-) True G258411
TU306176 lncRNA upstream 69917 21153906 ~ 21167598 (-) True G258596
TU306206 lncRNA upstream 154047 21238036 ~ 21241060 (-) True G258626
TU306265 lncRNA upstream 270450 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306289 lncRNA upstream 290909 21374898 ~ 21375103 (-) True G258700
TU306366 lncRNA upstream 430658 21514647 ~ 21555460 (-) True G258771
XM_026921223.2 mRNA downstream 26340 21039391 ~ 21047873 (-) True LOC113530858
XM_026920080.2 mRNA downstream 90664 20978938 ~ 20983549 (-) True mul1b
XM_026920970.2 mRNA downstream 97883 20974384 ~ 20976330 (-) False camk2n1b
XM_026921038.2 mRNA downstream 159104 20906009 ~ 20915109 (-) True zgc:193690
XM_026920243.2 mRNA downstream 174303 20887100 ~ 20899910 (-) True ints11
XM_034311924.1 mRNA upstream 1378 21085367 ~ 21101654 (-) True selenoi
XM_026920855.2 mRNA upstream 17708 21101697 ~ 21107926 (-) True iyd
XM_034311567.1 mRNA upstream 30978 21114967 ~ 21132071 (-) True ppp1r14c
XM_034311818.1 mRNA upstream 92555 21176544 ~ 21179055 (-) True LOC117599250
XM_026920601.2 mRNA upstream 97058 21181047 ~ 21184109 (-) True LOC113530508
TU305957 other downstream 206255 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 802306 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 954264 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 965003 20100999 ~ 20109210 (-) True kansl2
TU306159 other upstream 84997 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 270637 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 845186 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1362041 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 2114593 23198582 ~ 23240346 (-) False LOC113530288

Expression Profile