RNA id: XM_026920190.2


Basic Information

Item Value
RNA id XM_026920190.2
length 6116
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113530319
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19466628 ~ 19481596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGCTTTTAAATTTGCGTGCAAAATGGCTGCGCAGGTCGACTTGGTGCGTGTTAAAGTGGAGGAAAAGCCGAGGGACGGTGTGGAGCGAGCGAGCAaagataagaagaagaagaagaagaaacgaGAGCACTCGCCGTGCACGGAGAAGCATTCGAGGCCGGAGAAGGAGGCGAAAAAGATTAAGCTACATCACAtccaacatcaacatcaacaccaccatcaccaacatGCTGAACAACAGCGAGtacctcagcagcagcagcagcaacaacaacagcagcaaccaccacagcagcagcaggcagcagaagacttCTCACGGGATAAACTTCAGCAGCAAAGAGCTAGCGCCTGTGCAGCACCGCAACCACCACCATCACAACCACCACCACGGCCCGAAGAAGGACGCGGCTATGGTCTGGCCGCCTCGAAGGCGACACCTCTGCCTCACAAGCTCGCTCCTGCTCCCGCTCCTGCTCCTTCTTCTCCCGCTCCTCTCTTCACTTTCACTCCGCTTAAAGTAGCGAAGGCCGAGAGCCGCCACAGCACCAAGCCCCAGAAACAGCCCGAGAAGGAGGTGAAGCTGAAACCTAAGAAGGAAAACGCGGAGGTTAACGTGAAAGTCGACTCCTGTAAGAAGCAGACAGAGCCCAATAATGAGAATGGAAAGCCTCAGACCTTGGAGGAGTACCtgctgaaaaagaagaagaaaaagaagaggcaCCGGGAAGACGAGCAGCGTAGCAAGCGATTGCGGACGTCTGACAAGGAGATCCAGACCGATGAATGCTCTTTGTCCACCGAGTCTGACAAGACTGTCGTCGCCAACATCAAAGAGGAAAAACTCAGTCACGCTGGCTCAAACGAGGGTCCAGTCTTTCCTTTCCTCTCACATCAGGACCACTCTATTCGCAGCTCATGCCTGAAGACAAGCTCACGTTTTAGCAGGCTCATGCACGAGGAGGTGCAGCCCAATGGTGGAGCATCCATTCTGCACGCGTATGCCGATGAAATCTCTCTCTTGCAGCCTGGGGAGAAGGAGAGGTTTGCATGCGAGTTCCTCGACCTGGCTTTTAGCGAAATTTCCAAAGGAGCAGCAAGGTATGCACTTTCGGTGGTCCATGGCGCTGCTGCCTACCTCCCCGACTTCCTGGACTACTTTGCCTTCAACTTCCCCAACACGCCGGTCAAGATGGAGATTCTCGGAAAGAAGGACATCGAGACCACCACTATCTCCAAGTTTCATTCCCAGGTGAGTCGAACATACTGCTCTGGGACATATCGTGCTGGCCCCATGAGACAGATCAGCCTGGTGGGGGCCGTGGATGAGGAAGTAGGGGATTATTTCCCGGAGTTCCTGGACATGCTGGAGGAGTCGCCGTTCCTCAAGATGACCTTGCCATGGGGCAGCCTGTCCAGTCTGAAGCTGGACTGCCGCTCTCAGAGTGACGACGGGCCCATCATGTGGGTTAGACCAGGAGAGCAGATGGTTCCCACAGCGGATATGCCCAAATCTCCATTTAAGAGGCGCAGGTCCATGAACGAGATCAAGAACCTGCACTACCTGCCGAGGACGAGTGAGCCACGTGAGGTTCTGTTTGAGGACCGGACGAGAGCGCACGCCGATCATGTGGGCCAGAGTTTTGACTGGCAGAGCACGGCCGCTGTAGGGGTCCTCAAAGCCGTGCAGTTTGGAGAGTGGAGTGAACGGCCAAGGATAACCAAAgatgttgtgtgttttcatgcaGAGGATTTTAATGACGTTGTGCAGAGGCTTCAGCTCGACCTGTATGAACCTCCTGTATCTCAGtgtgtgcagtgggTGGACGATGCGAAGCTGAACCAGCTGCGGCGCGAGGGCATCCGGTACGCGCGCTTACATCTGTGCGATGACGACATCTACTTCATCCCACGCAACGTCATCCACCAGTTTAAGACAGTGTCGGCTGTGTGCAGCTTGGCGTGGCACATCCGCCTCCAGCAGTACCATCCGGAGAAAgagcaaaaagaagaagaagaggaagtaCGCAAACCCAGCTCGCCCACGCCGGACAAGCCTGTTAACCAGAAGTCAGCCACGTTGCACCCATCTCACGCGGACACTTTGCACCCAGAGAGTGCGCCTTCACTTAACACCACTCCTCAAGCTCCTACAGGTCCTCAGGCTTCCCTCCACCCAGCTCCAGGTGACTCtctgagcagcagcagcagcagcagcagcagcagccttcACTGATTTCTCCCAATGACCTGCAGGTGACTGAAATCAGTTTCACTTTAATCAATTTAACAAACTTGACTGACATTCCAGGAAAGGATTTGGACCGTCTGACTAAAGCAAGACTCTAAAAGTCTGacgattatatatatatatattttttttttttttttaaaagaaaaacattttgttcaaGAAACGACCCCTGTAagtactttttaatttttttcactcagccaaagtatttaattttaataatattttttgctgATTGTTCAgtattgttttatattcatttatatctgAAATGGAGCTCTTTCGAGAGGAAATTCTTCATTATTGTCTACCAAACTGTGCATCATGTGGATCAGTTAATTGGTTtttgcaaaaggaaaaaaaaaaaagtgcctaaCAGCAATCATGTCtctaaagaaggaaaaaaaggtcCTGTTCATTTCTGTGgttatttgtttgaaatttgtGTTTTATCCCAGCTGGAGAATCAATATTAGTGATTTACTTTTCATCACAGAGCAGGATTGATttctgattttgttttattctgtctGGCATGGAAAGTAAATTTGTATccaaataagtaataaaataacaacTGTTCCCAAAGAGTTCCCAAAGGCTGTGCAAAGCTGGATCTTGAGATGTTTAATTGACTAATTTCCTAGCAATGGCTTCTCTCTCTGGACTTTTCTTTAATATGAATTTCTCAGGGTCCCTTTTcatttgagggttttttttttttttttttttttaaattggacgTTATGGGTAAATTTGTTACAGTGCCACAACTGGATCATGTTTATGGCAGGAATACAGGTGTACTGCACAAGTCTTTCACTAAATCTTCCTCTGAATTTACTTTCAGATGCAGATCACAAGCTCGaatacatgttaaaaaaatttttgtgtTTCCTCAGAAAGTTTCTAACAGTTGACTGTTTTGTGAGTTACTAGGAGATATTTTTCAGTGCAGATAAAATTCAGGCACAACATGCCTGATTAATTTACTTGATTTCTTAACTTGGAGTGTACTAATTAAATGACTTTCATGTGGTAAATCATTAAAGGGGTAATCAGGGGTGGAGAAATCACTAGCCCGGACACCTGGGACAAGcaggtttatttattgtaaGTAGCCCACGATAAGTTGAACAAGATTCAacaaccaaaaagaaaaaaactctctactcctcctcctctttctttgGTATGTAGGCTTTGTTTAAGCTTAATGTGCTTCACAGTGGTGCACCAGCATGCTTCCGAATCGCATCATCCGCACTACACACGTCACACGAGACGCGATCTGGCTGACGGTAGAAAGCCGTTTATGGATGACAGACGATCTTTTGAGAATCAGGAACATTGCTGCACACACACCTAATCATATTAGGTgtaaatatctttatttttatgtgtgttGACAGACAGAACAAAGGACCGAACAAATCTTAATGCCCAAATGCAGGCCAGTGACTTGCTGTCTTTTCTCGTTTCCCTTCGTCTACATTAGCgatgtaaacctcaggcttccaaaCGATACGGTATTTTGATTCAATATTTGACTATCAGTAATCTGCTACGATCTGAATGATATGTGAAGAACTTTTGTGCAGAACCTGGGGTAGGCCTACTGTTAATTCACGAGCGATGGTGTCGTAGAGAAGGCCAGACTTATGCGCAAATCAGTGCTAgctaattatattatttacacatcagtttataaatatgaattaattttatacaccagttgtctgtcctttttttgaATCGATTTGTATTCAATTTGTGATTGCCTTTTAAATTGGTGTATCGATCCAAATAATCCGATTGTTCCATCATTAGTATGTAtcaatgcacttaactagcatAATTTTATTACCTTAGTTTAGCTAccacttttgtttgtttgtttgtttgtttgttttttttaatagcctAGTCAGTTTCCAGGCAACCAGAACAtaggactgggcagcacaccgGGCTAGCTAATAAGTGTATGATCTTTCCACCCCTGCATAATACTGGATCCTCATTATTGTCAGTCAGTCTGGTTACAGAGCAACAGCTCAAATTATACAAACGTGAATCTTTTTAAAACAGAGCTTCCTCACTGGCCGGTAGATTTGCCTTTTTGGTCACTGGCCAGTTTCCTATTTGTCAGAACTGATTTTCAGTGTTTCAATGTTTGCTCTATTTTTTCCAAATCATTATTTGACACGGCACTCAATTACCTCTTTGGAAACTAGCCTGAGTTTCTACAAAACGTCATATGATCAGGTGAAATTCATGAAGGAAATGATGACGAGTCTTTTAATGACAAAACATTTTGCTGTGTACTGTTTTCATCAAGACTGCTTCTGTTCTAAATCCCCTcatttcctaaaatgttttatcttatttatatatgttaatAGGAGATACAGGAGGGGGAATATTATGTTTCTTCTGTGAATCTAAAGTTAGAACTGAACATTTTTAGGAAGTGTAGATTCCGAGAGCAAATAGTCGGTGCTGTTTTTTACCATTTCTGTGTTGCACATGTCGCTAAGGTCATCATATGCCTCAAAGCAGTTagattggctttttttttcttttcttttttttttaaaaacactgaaatgaccTTTATGACTGTAcagtaaatttttttgttatcttatattttagtttttaaattaaacctaaCCGTGCGTCATCTGTCAACATCCAGATTggaatgtaatttatttttacaccagCAAGACAAATCATTAACGCTCGCTGCATCGGTCACTTACAGatacacattttatacattgctATAACTTTCTAACCTTTTCTCATAGTCTAGGAAATCAAAATGTAGGTTTTCCAAAAAGTGTACCTACACCTGGCTCATGgttggcatttaaaaaaagaaaaatccatgTGCTTATAAACGCTAGCAAGTTCCATATGCAATATATTAAGAAGAAGAATTCTCAGTCCTGAACTGAATGGAACACAGGGGTAGTGAGTTTTAAAGTTTGCACAGTAATGTGTTTTTTGAGCATTGTGATATCGTATAACTGATGATCGGTTAaacatctgtctttctctgatgCAGTAATCACCTCCTAGATCCAAATGAGTGCCTTTTTACACGTCTAACACTCGGTGTGTGTTCTTACTCGGAGGTGTCGAACACTGCAGAGCTGCACAGAGTCGAGTCTAGCAATAATTTAATCTACTCATGGTTTAGCTAGACCTTAGTACATCAGTACCAACAGCAACTTACTTAATCTAAAAACAATGAAGGCCATTTTGTACATTATCACAAAAAGGTTGCAGGTGAGAAATGTAACTCTTGGCTGTTTAAAACGTTTCTTTCAGGCCTTTCAGGGCTTTTGGTCTCTCATGAATTCAGGCACTGAGGCGAATTTAATAATCACTTTCTATGGTGCATTTTCTggaaataattcaattcaaaccTGGCAATTTTAGCAGCCTGCCTTTTTCAATAAACCCTTCCCCTGCAAATTAGTTACATCACATGTACACATAATGTGTTACTTCTGACTACTGGcagctattttattattttttttgtcattgttgaTCAAAattcttaacttttttttttttttaaataattctttgCACTATAGGAAAATCCGCTATGGAATCAAGGCATGCTTTGTGTGAATTACATTTAGCATCACTAATTGCTGttgttaatgtttgttttttagaagGTCTCAGTTTTCCATATTTGTTAAAGGACGTAATGTAAATAATCAGCAACGTTTTAATAGAACTGTTCTGTGTACATTCTTAATCATGTGTATAAAGACATACAATGGAATGCATAGacctttttctgtatttttttaaataaatcattttatga

Function

GO: NA

KEGG:

id description
K22610 RSBN1, KDM9; lysine-specific demethylase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305201 lncRNA downstream 1292 19464054 ~ 19465336 (-) True G257819
TU304929 lncRNA downstream 34905 19431450 ~ 19431723 (-) False LOC117599227
TU304928 lncRNA downstream 35242 19431162 ~ 19431386 (-) True G257604
TU304920 lncRNA downstream 66786 19399587 ~ 19399842 (-) True G257596
TU304919 lncRNA downstream 69477 19396942 ~ 19397151 (-) True G257595
TU305250 lncRNA upstream 98616 19580212 ~ 19581682 (-) True G257866
TU305254 lncRNA upstream 104732 19586328 ~ 19591130 (-) True G257870
TU305265 lncRNA upstream 130324 19611920 ~ 19614679 (-) True G257880
XR_003403186.2 lncRNA upstream 569825 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 647309 20128905 ~ 20129112 (-) True G257980
XM_034311667.1 mRNA downstream 28994 19431451 ~ 19437634 (-) True LOC117599227
XM_026920193.2 mRNA downstream 36651 19403660 ~ 19429977 (-) False LOC113530320
XM_026920192.2 mRNA downstream 36654 19403660 ~ 19429974 (-) True LOC113530320
XM_034311655.1 mRNA downstream 79587 19370687 ~ 19387041 (-) True LOC113530570
XM_034311656.1 mRNA downstream 80091 19370687 ~ 19386537 (-) False LOC113530570
XM_026920182.2 mRNA upstream 1497 19483093 ~ 19621610 (-) True magi3a
XM_026920184.2 mRNA upstream 4253 19485849 ~ 19621613 (-) False magi3a
XM_026920226.2 mRNA upstream 152458 19634054 ~ 19651590 (-) False tmem269
XM_034311672.1 mRNA upstream 152458 19634054 ~ 19651589 (-) False tmem269
XM_026920237.2 mRNA upstream 152458 19634054 ~ 19651589 (-) False tmem269
XR_004579690.1 other downstream 79587 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 338092 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 402046 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 953371 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 1165941 18285486 ~ 18300687 (-) False znf217
TU305224 other upstream 133931 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 619403 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 622178 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 628867 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 770574 20252170 ~ 20271907 (-) True G258077

Expression Profile