RNA id: XM_026920202.2


Basic Information

Item Value
RNA id XM_026920202.2
length 2677
RNA type mRNA
GC content 0.42
exon number 10
gene id hnf4a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19167301 ~ 19187959 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGGCAGCATGCATGAGACTGAAATGCAAGGAGCTTTGAGAGAGATTATGGCTACAAGCTCTGTCTTGTAGGCAAGCTAGGATTGTGTTTCATCCCAAGAGTTGCACAGCCAGAAATCCCAATGTGATTCCATTCAGCTCTTCTTACCTGATGTTGGTCGGTTGAGGATAAGATGTCTGTTCAGAGTAGTATTTCCAGGGATGTTTGACATGCAAGATAAATGGACCCAGACTGTAGAAGATGTCACTGAACCATTCAGTGGTTTAGTCTCCCATGGCTTGTTTTTATGAGAAATCTAACTGATTCCATTAACTCGATCCGGCATCTTGATTTAATACTCCTCACCAGCTGAGGGTGCCAACCTGAATGCTGCCAACCACCTGGGTACGGGGACTCTGTGTGCTATCTGTGGTGACCGGGCAACAGGAAAACACTATGGAGCCTCCAGCTGTGATGGCTGCAAGGGTTTCTTCAGACGCAGCGTTCGCAAAAACCACATGTACTCGTGCAGGTTCAACAGACAATGCATAGTGGATAAAGACAAAAGGAACCAATGCAGATACTGTAGGCTTAAGAAATGCTTTCGGGCTGGAATGAAAAAAGAAGCTGTACAGAACGAAAGAGACCGAATCAGTACCAGAAGGTCCAGTTATGAGGACAGCAGCTTTCCCTCCATCAATGCACTCATCCAAGCTGATGTTCTCTCCAGACAGATCTCCTCTCCAGGTCCGATCATGAACGGTGACATCAGAGCAAAAAAGATGGCCACCAttacagatgtgtgtgaatCTATGAAGCAGCAACTGTTGGTACTGGTAGAGTGGGCCAAATATATCCCAGCCTTCTGCGACCTCCCACTGGATGACCAGGTGGCTTTGCTACGTGCTCATGCTGGAGAACATCTCCTGCTTGGAGCTGCCAAGCGCTCCATGCTCTACAAGGACCTTCTGCTATTAGGTAATGACCATATAATTCCTCGGAATTGCCCCGAGTTGGAAGTGAGTCGTGTAGCAGTAAGGATCCTTGATGAGTTGGTCCTTCCTTTCCAGGAGCTCCAAATAGATGATAATGAATATGCCTGCTTGAAGGCCATTGTATTCTTTGATCCAGATGCCAAAGGTCTGAGTGATCCGAGCAAGATCAAGCGGATGCGTTACCAGGTGCAGGTCAGTTTAGAAGACTACATCAACGACCGGCAGTATGACTCACGGGGACGATTCGGCGAGCTGCTGCTTCTGTTACCCACACTACAGAGCATCACCTGGCAAATGATTGAGCAAATCCAGTTTGTTAAGCTGTTCGGGATGGCCAAGATCGACAACCTCTTGCAGGAGATGCTTCTGGGAGGTTCTGCTAATGAGGCCCCCCATGCTCCTCCATCTCTGCATCCACACCTGGTCCATGAGCACCTCAGCAACAACGTCATTGTGACCACCAGTATGGCCACTCCAATTCACAATGGACAAATGTCCACACCTGAAACTCCAATCCCATCTCCTCCACCAGCTTCCAGCTCTGAGCATTACAAACTGGCCCAGGGCGTCATAGCCACGGTGCCTAAACAGCCGACAGCCATTCCTCAGCCCACAATCACCAAGCAAGAGAGCATCTGaccatctcaaaaaaaaaaaaatcccacatcCTAAAACAAATTAGCTGTGGACAGCTGGCTTGCTTCAGAGATTCCTGGAAAATGTAGTACAACATGTTTTTACTAGTTATAATTTTGAGGCAGCCATTAAAAGTCCATTGGTCTATTGTTAAACCATTTGCTCTGGGAAGGAGTGTTTGCAAGTGGTATAATATAAAGTACATTTtgggttatttttatttttgtttaaacattaCAGTGACCAACAAAAGAAAACCCCCCAGTCATAGATAATGACATGTAGACCAAAAGAGCAGAAACCTCAGGATTGTACAGTAGATCTACTGTGGAAGaggcttttattattttttttttatgtattcaaTCAACCTGCCTTATAGGCTGATGTGTTTTTTAGTGGTACATATTTATACTCCCCTAGGAGAAATTCATATTTCAACATGTCAACAAAGAGAATTagcaaagtttatattaatattattatattaagattaaataaatgttacaacaGGCCTTTCATCTGGCAAAAATCAGATGTGTATGTTGTACAGTATTTTAATGACTGAGTTAATATGAATGATTTTTAAAGTACTTAGGAATACGCTACACTGTTTGTGCCTTACAAGCTTACAATTTGCATAAACTGCTCTTCATGAGctgttcatatattttttttctttgacgTATCATAGAAAATGTACATCTCATGCTTTCTGTTTTAGCTTTCGAATTATATATTTGTTGTGAGAAGTTCCATATGTCCAGTATTTAAGTCTATTTAGAGACAAAAAACTTCTTAAATGTCCTGTTCTACCCCATTACTCCATGACTAAgaaacaatttctttttttccatgacACTATCACAGTGACAGGTTTATTAATGTTAGTCACTGAAGCCGACAGCCAtaagagtgtgtaagtgtgtaagtgtttaactGAAACAGTGTGTTAGGATACAATATGCGGTTTGGAAAGAAGTGCCTTGCTGCACATTCCTAGCTTGAAATGAAAGCTGACTTGGGCCTTGCAAACTGATATTAAAAGTCAAggttatattttta

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07292 NR2A1, HNF4A; hepatocyte nuclear factor 4-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304438 lncRNA upstream 63819 19117877 ~ 19118533 (+) True G257199
TU304435 lncRNA upstream 116219 19065854 ~ 19066133 (+) True G257196
TU304354 lncRNA upstream 245510 18909837 ~ 18936842 (+) False G257127
TU304359 lncRNA upstream 245933 18891889 ~ 18936419 (+) True G257127
TU304467 lncRNA downstream 10587 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA downstream 15377 19203336 ~ 19222505 (+) True pkig
TU304478 lncRNA downstream 45044 19233003 ~ 19235261 (+) True G257235
TU304475 lncRNA downstream 53153 19241112 ~ 19241568 (+) True G257232
TU304477 lncRNA downstream 55226 19243185 ~ 19245707 (+) True G257234
XM_026920224.2 mRNA upstream 17091 19161213 ~ 19165261 (+) True r3hdml
XM_034311662.1 mRNA upstream 64789 19091010 ~ 19117563 (+) True rbms2b
XM_034311663.1 mRNA upstream 64789 19091014 ~ 19117563 (+) False rbms2b
XM_034311661.1 mRNA upstream 64789 19091017 ~ 19117563 (+) False rbms2b
XM_034311666.1 mRNA upstream 211104 18969994 ~ 18971248 (+) True LOC117599226
XM_026920210.2 mRNA downstream 2813 19190772 ~ 19194858 (+) False ttpal
XM_026920212.2 mRNA downstream 2926 19190885 ~ 19194858 (+) False ttpal
XM_026920211.2 mRNA downstream 3273 19191232 ~ 19194858 (+) True ttpal
XM_034311673.1 mRNA downstream 10467 19198426 ~ 19221887 (+) False pkig
XM_034311674.1 mRNA downstream 10495 19198454 ~ 19222559 (+) False pkig
trnae-cuc_34 other upstream 149364 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 270638 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2061411 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2673972 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2786140 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 290343 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1202850 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1322285 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1715146 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1715188 20903147 ~ 20905073 (+) False ubxn10

Expression Profile