RNA id: XM_026920207.2


Basic Information

Item Value
RNA id XM_026920207.2
length 1342
RNA type mRNA
GC content 0.47
exon number 11
gene id ada
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19231846 ~ 19251695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAACTTTCAGGCTCAGCGCGTGCAGCTTCGTTTCAGTTTGTCGCACGAGTAAGTCGCTTGACTGGGAAGCATGGCGGAAAACGGGGTGAACAGCGGAACAGCTACTTTTGACAAACCCAAGGTTGAACTGCATGTACATCTTGATGGTGCCATCAGGATCGAGACCATACTTGATGTGGCCAAGAGGCGAGGTATTACCCTCCCTGCAACCACAGTGCCCGAGATGACCAGCCTGTGCTCAATGGATAAGCCGGGAACACTCACCGAATTCTTGGGCAAGTTTAACCAGTACATGCATGTCATTGCAGGGGACAGAGAGGCCATTAAAAGAATTGCCTATGAGTTTGTGGAGACCAAAGCTAAAGAAGGAGTGATTTACGTGGAGGTGAGGTACAGCCCGCACTTATTGGCCAACTGCAGAGTGGAGCCGATACATTGGAACCAGAAAGAAGGTGACGTGACACCAGACGACGTGGTGCATCTTGTGAATGAGGGCCtgaaggagggagagaaagcCTTCAGGATCAAAGCTAGGTCCATTTTGTGCTGCATGCGGCACATGCCAAACTGGTCCATGGAAGTGGTGGAGTTATGTAAGAAGTATCGAAACGATGGCGTAGTGGCCATAGATATAGCAGGAGATGAATCTCTAAACTGTGAAACCTGTCCTCTTCACCGCGAAGCCTATGAGGAAGCAGAGAAAAGTGGCATCCACAGAACAGTGCATGCGGGAGAGGTCGGCCCTTCATCTGTTGTGAGAGAGGCTGTCGAAGTGCTGAAAGCAGAGCGTATTGGACATGGTTATCACACAATCGAAGACGAAGTTCTGTACAAACAGCTGCTTGAACAGAATATGCATTtcgagACATGTCCAGTCTCCAGTATAATGACAGGAGCTTGTGATCCAGACTTCACTAAGCATCCACTCATCAGGTTCAAGGAAGACAAAGCAAACTACTCTCTGAATACGGACGACCCTCTGATTTTAAACTCCACCTTGGACTCTGACTACCAGGCTGCGAAGCAGTACATGGGCTTTACTGAAGAAGAGTTTATGCGGCTGAACATAAATGCAGCCAAGTCGTGCTTCTTGCCtgaaaaggagaagaaggacTTACTGAATCAGCTCTACGAGGCCTATGGCATGATCAACGACACTAGCTTCTAAGCACAGATCACCTAACCGAAAGCAGACTGAGCCTTTCCGATACACTCCCACAGGAATTAAATCCCTTAACTAAGCACTTACTTCAATAACAGAGAGCACTCCCTCTTTTTGTGTTTACCACACAGTAATTAAGTACCACctcacatttatatacatatatatatatatatat

Function

GO:

id name namespace
GO:0042110 T cell activation biological_process
GO:0060169 negative regulation of adenosine receptor signaling pathway biological_process
GO:0046103 inosine biosynthetic process biological_process
GO:0006154 adenosine catabolic process biological_process
GO:0043103 hypoxanthine salvage biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0060205 cytoplasmic vesicle lumen cellular_component
GO:0030054 cell junction cellular_component
GO:0004000 adenosine deaminase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01488 add, ADA; adenosine deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304813 lncRNA downstream 205 19188677 ~ 19231641 (-) False G257518
TU304811 lncRNA downstream 205 19198536 ~ 19231641 (-) True G257518
XR_004579693.1 lncRNA downstream 53754 19158291 ~ 19178092 (-) False LOC113530339
TU304796 lncRNA downstream 53889 19158704 ~ 19177957 (-) False LOC113530339
XR_004579692.1 lncRNA downstream 68686 19158291 ~ 19163160 (-) False LOC113530339
TU304919 lncRNA upstream 145247 19396942 ~ 19397151 (-) True G257595
TU304920 lncRNA upstream 147892 19399587 ~ 19399842 (-) True G257596
TU304928 lncRNA upstream 179467 19431162 ~ 19431386 (-) True G257604
TU304929 lncRNA upstream 179755 19431450 ~ 19431723 (-) False LOC117599227
TU305201 lncRNA upstream 212359 19464054 ~ 19465336 (-) True G257819
XM_026920221.2 mRNA downstream 83834 19143737 ~ 19148012 (-) True fitm2
XM_026920220.2 mRNA downstream 89372 19130108 ~ 19142474 (-) True LOC113530333
XM_026920189.2 mRNA downstream 104233 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA downstream 104233 19119031 ~ 19127613 (-) True si:dkey-21c19.3
XM_034311652.1 mRNA downstream 167373 18936577 ~ 19064473 (-) False lrp1ab
XM_026920203.2 mRNA upstream 58217 19309912 ~ 19319756 (-) True gdi1
XM_034311884.1 mRNA upstream 82430 19334125 ~ 19363567 (-) True LOC113530330
XM_034311655.1 mRNA upstream 118992 19370687 ~ 19387041 (-) True LOC113530570
XM_034311656.1 mRNA upstream 118992 19370687 ~ 19386537 (-) False LOC113530570
XM_026920193.2 mRNA upstream 151965 19403660 ~ 19429977 (-) False LOC113530320
trnak-uuu_17 other downstream 103310 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 167264 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 718589 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 931159 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 1318569 17893081 ~ 17913277 (-) False kcng1
XR_004579690.1 other upstream 118992 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 363832 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 849304 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 852079 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 858768 20110463 ~ 20119949 (-) False mlh3

Expression Profile