RNA id: XM_026920211.2


Basic Information

Item Value
RNA id XM_026920211.2
length 2366
RNA type mRNA
GC content 0.43
exon number 5
gene id ttpal
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19190772 ~ 19194858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCACATATTCAGCTTGTAAATATTCATATCATGATCTTTCCCAATTTTAAATGCTTCCTATTTAATTAGCCTTACCTGCTAATGACATATAAACCTAGCTCAAGTAGCTAAGTAGCTGACAAACAGGTCACATTTTACTCAggtgaaaatatcaagaatttctctttttttcccatccCAGTCTGTTTTGTACATCTATCATTTAAACTGTTTGCATCTATTGAGCTTTAGCTTATAATGTCagacacagaaataaaatagattacattttttaaactttactaTCTGATTTAACCACGTGCTATCAAACAGAGACACGCAGAGGAAGCCAATGGCAGATCAGAATGGCCACACTGATCCCGCCCCTTCAGTGGACGTGATGGCAGGTGTACCCTTCCCTGCAGCTCCTCCACCGATCTACGTGTGCACTCTAACCCCGGATCTGGAGGCCAAGGCACGAGAGGAGCTACAGGAGAAGCCCGAGTGGCGTCTTCGGGACGTCCAAGCGCTGCGAGACATGATCCTGAAGGAACATTCCAGTCTGAGAACTCGGCTGGACGACGCCTTTCTCTTGCGCTTCCTCCGAGCCAGGAAGTTTGACTATGACCGTGCGCTGCAGCTCCTCCTGAACTACCACAGCAGCAGGAGGGCCTGGCCTGAAGTCTTCCAGGACCTGAAGCCCTCAACGGTCAAGCACGTTCTCGAGCTAGGCTTCCTGACCGTCCTGCCCAGACCTGATCCTCAAGGCCGCTACGTTCTCTGCTTACGGCCAGGGAAATGGACACCGAATGATTATCCGTTTGTGGACAACATTCGGGCCATTTATCTGACACTGGAAAAGCTGATTCAACCTGAGGAGACGCAGGTGAATGGAATAGTCATCCTGGTGGATTACACTGGGGTTGGCTTGTCTCAGGCCTCCAACCCAGGCCCTCTACTGGCAAAGAAAGTCGTTAGCATTCTTCAGGATGGATTTCCAATCAGAATAAAGGCAgtcaatatcataaatgagcCTCGAATCTTTAAAGGAATATTTGCAATAATAAAGCCTTTTTTGAAGGAGAAGATGGCTGAAAGGTTTGTCTTGCACGGCTCAGACCTGTCGTCTCTGCATCGTGTCATCCCGCGCTCTGTGCTGCCGCAGGAATACGGAGGCGTGGACGGTAGACTGGACATGACAGCTTGGACTCGCACACTACTAGAGGCTGAGGAGGAGTTTGTTGTGGAGTTTTGCCAGCCGGAGCCTCTGGAGGGAGCGCTAATGCCCGACTCGTTGTTGTTTGAGGGCGAGCAGCCTGAGGACTCTTACAGAAGCCTGCGCTCGCAGCTCTACTACTGCTACTGAGGTCTCGTCAGGCGGCCGGCACCTTCTGTTTCCTTAAAGatgttatttttaacaattaGGGTCAAAGATcgggttttatttttcttaaatcatTAAGCTAAAAATGGTGACGTCTGTGTGAAGTTCACAGATTACAAATAAAAGGTTGTTGAGATGCAGCATTATTGTTTGTAGAgcattaataaattacagtttATAGGAAACATTTTTCTGAGACTGCTAGGGTCAGGAggtcagggattttttttttttaatagcatcaTTTTCGCTCAAGGTGATGGTTCTGGACATACTGTATCAAGTTAAGGtggttttgaatattttaaaagaatctGATTTTATGGCACAAGAACAAAATCCAAATGCCGATAGACATCCATTGCTATTGCTTTGTGCTTACTTGTGCAAATGTTACACACAACCATGCAAACGCCTTGTTTTAACACTAACGTTACAATGCGACAAAGTATTGCCTTaatctaaagaagaaaaaatcgATGTAAGGACCATGCGATTTAAATCCAAAGCAATATGTGCATTCATGTTTTGTTACCTCAATTTTGcactatgcttttttttttctttatttatcatGTTCATGCCTTTATTTTTCAGATGATGTTTACATATGGTGTATTATGTCAGTGTGGTCAGTGTGTACTCTAACTGCGCAGAAAGTTTTCTCATATGTTGACGTAAAGCTGCAGTTAAGGTTTACAATGCATTTCTGTTCACTGTGTTGCTGCTTTAGCCATTCTGTtgttacactttttattttattgcaaggaacttttattaatataataattttttccaAATGTCTAAATTCTGGGTGTTGTGGCTTGCACAGCATTGTAAGGTTGTcaatattatgttaatattcCAGATTCCAGTAGGTGAAATAAATCATTATCTTATTTGCGAGGTTAGTTTGTCTTCCCTGGGCATTTGGGTTTGGCTTTAGTGATGTGACTAGTGGtaccgcaaaaaaaaaaaaaaaaaaaaaaatccccacttA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304438 lncRNA upstream 72699 19117877 ~ 19118533 (+) True G257199
TU304435 lncRNA upstream 125099 19065854 ~ 19066133 (+) True G257196
TU304354 lncRNA upstream 254390 18909837 ~ 18936842 (+) False G257127
TU304359 lncRNA upstream 254813 18891889 ~ 18936419 (+) True G257127
TU304467 lncRNA downstream 3688 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA downstream 8478 19203336 ~ 19222505 (+) True pkig
TU304478 lncRNA downstream 38145 19233003 ~ 19235261 (+) True G257235
TU304475 lncRNA downstream 46254 19241112 ~ 19241568 (+) True G257232
TU304477 lncRNA downstream 48327 19243185 ~ 19245707 (+) True G257234
XM_026920201.2 mRNA upstream 3273 19167301 ~ 19187959 (+) False hnf4a
XM_026920199.2 mRNA upstream 3273 19181966 ~ 19187959 (+) False hnf4a
XM_026920202.2 mRNA upstream 3273 19182352 ~ 19187959 (+) True hnf4a
XM_026920224.2 mRNA upstream 25971 19161213 ~ 19165261 (+) True r3hdml
XM_034311661.1 mRNA upstream 73669 19091017 ~ 19117563 (+) False rbms2b
XM_034311673.1 mRNA downstream 3568 19198426 ~ 19221887 (+) False pkig
XM_034311674.1 mRNA downstream 3596 19198454 ~ 19222559 (+) False pkig
XM_026920209.2 mRNA downstream 68559 19263417 ~ 19271222 (+) True ccn5
XM_034311665.1 mRNA downstream 78429 19273287 ~ 19275753 (+) True si:dkey-78k11.9
XM_026920219.2 mRNA downstream 78429 19273287 ~ 19275753 (+) False si:dkey-78k11.9
trnae-cuc_34 other upstream 158244 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 279518 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2070291 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2682852 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2795020 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 283444 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1195951 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1315386 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1708247 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1708289 20903147 ~ 20905073 (+) False ubxn10

Expression Profile