RNA id: XM_026920220.2


Basic Information

Item Value
RNA id XM_026920220.2
length 3344
RNA type mRNA
GC content 0.36
exon number 12
gene id LOC113530333
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19130108 ~ 19142474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGTAGATTGTGCTTTAGTGCTGGATGTTGCTAGAATGTGCCTTTTGGAGGAAGGGAGGGGGATCAGTCAGATTAATAGAGCTGCTCTGCGGGATTACACTATTACAACAGTGCATAAGGTTTCATCTAAACAGACCAAAACAAGCATCTCTTTATTTGCAACAAATTAGTGGAATAGACACAAAAGGAAGAGTGAAGAAATACAGAAGAACTATATAGGACGATTGATCAAAACAGACATTTATCATGACTCAAGGCAAGCTTTCAGTGGCAAACAAGTCAAATGAAGGCTCATCACTGCCTCCACCACCTCCAAGCTATGAGGAGGCCACTGCAGGTGGAAGCCCCAGTTACAGTGGCAACTATCCTGATGAGGGAGAAATGTTCACAGAGTTCTGCTGGGATGACCTGAACGTACGCCGAACATTTATACGGAagGTCTATGCCATCCTCGCACTCCAGCTCTCTGTCACCCTGGCCATTGTGTCTCTCTTCACTTTCTGtgaTCCCATAAAGGACTATATTCAGTCTAATCCTGGATGGTACTGGGCAGCATACGCAGTGTTCTTTGTAACCTACCTGACACTGTCCTGCTGTGCTGGACCGAGGAGGCAGTTTCCATGGAACCTGATTCTGTTGGCCATCTTTACTCTGTCTCTTTCATATATGACAGGAATGTTGTCCAGttaCTACAATACCAAGTCTGTGATGATCTGTTTGGGTATTACAGTCCTGGTCTGTCTCGCCGTCTCAGTTTTTAGCTTTCAGACAAAGatTGATGTGACCTCATGTCAGGGTGTGCTGTTTGTCACGTTCACCTCATTCTTAATATGTGGACTGGTCCTGGCTTTTATTCTTCCCTTTGGCCATGTTCCTTGGATGCACACTGTGTTTGCTGGGCTGGGAGCGATACTGTTCAGCATGTTTCTGGCATTCGACACACAGCTTCTGATGGGAAAAAAGCGCTACACTATAAGCCCAGAGGAGTACATCTTTGCCACACTCAATATCTACCTGGATATTGTGTacatcttctctttttttctccagctTTTTGGAAATCAGAGGGAGTGAGCCGAGCTTAACCCTGCTCTCCTAATTAATGCATTTCCAGGGCTATATGCAATGTGAAGTTACATCTCACCCCGTTGTATTCTGGAGTGATTTGCCATCTTGTGAGAATCACAGTGTGTATTGTTATTTGCATTGCATTAGAAATTCATAATACTCCAGTATTTTCAAGCTAATCTCTACCAACCAGATCTGTAGTTTGTTTGTGTGATTAGCCCAGACAAGAATAGAAAACTTATTTATCCAAAGCTCACTTAGAATCCCACTAAGAAACAGCTACTGGATtaaattcagaaatatttaGAAGGCATGATGATATaacacaaattcaaaactaATAGCTACACTAACGTTAAAGGTCTTAGGAAGGGAAACATGGGAGAAGATCTTAGCAAAATTATGTAGTTTTAGTCAACCTTCCAATACCAGAACAATTCTGGTTTGTTTTCTGAAGGCTTTGTAGTGTCCATGTGCCATCAGTCTGAAACCTGGGCCCTTTCATGTTTGTGTCTATGCAGAAAACATATAGCCACAAATTTCGATGTAGAACAAATCCCTTTCACTGAAAAATTCACAAAGCCATTCAACCAAAACTTTCTGCATAAGCAgcctttaaatatatataagtaaataagtagCCATAGCAAAGCTAATAATGGGTGAAtggtactactactactactactactactaataataataataataataataatgatgcatATTTATGCTGTATTGTTTATGCGAGGCAAATCTCAAACTGCTACAGAGTAAAAATGATACATAAGATAAACTATGTTAAAAGGCAAAGTACTTTAAAGGCcttaaaattatacaaaaatatggaaattataCTAAGATATTAAAATGGGCATAATGAAATTTATTGAATTGCATATTGCATAAAAAGACACAACAGTGCAAATTAATAggtcataaaatattaaagaatataCTGTTGCAAAACCACAAAgttagccatttttaaaaaagtaacatttttaattactcTCTTAAGCAAAATAGTAGTATGGCAGAAATGAtctaaaatctgaaaaatgaataGTTATTGATTCGCTCCACTATATCAGagaaaattgtatttatatattgatAAACTATCCTAGCTAAGAATAATCCtggatatattttaaaaaaaaatgcataaaaagtttaaaaaagaaataccaAATACTCGATCAGTCGTATCTGATGCTGTCATATTTGAAAATTTTGTAATAAGAAACACTCTGAGCCTCACAAGATGCAGATACCTTCCCAACACAATGCAGCGTGAGATAACTCCATGTTCCCTGTAGCCTTCTTTCTCTGTTTAATTCCTGTTTCTAGTTTGAATGATCCTGTCCTCTCAgtgttttattgtaatgtttggTCCTTGAGCTAAGCTTCTCTCCTGCTCCAGTGATTGCTCCACATCTTTATCCTGTAATTCTGAAGTAGGATGTACAGAACTACATCTATGAAAGGATAGATGCAATTTAAATACAAGTGTgtatgacaaaagaaaaatgtgttacatGCATACATGTACAGTGCCAGTATTTCTCatgtgctttaatataaactatGAAACTGAATACTTTTCTTGTGAAGGAAATGAGCaattatgttatattaaaaaacacCTAAATGCATAGAACCATCATAACTAGATGAAATTCTTTTAGGCTGTTCTGAAGCTGTATTTCCTCCTTGATAAAGGGCCCAAGGTTGATCTAGTTGCACGTCAACATGTGTATAGATAATttctataaaatgtattttgtggAGATTGTATGCAAAGCTAATGTatgttttctgctttttctaAAATCCATTCAGCACATGATTTGCagtctttcactttctctcactgGTGAATATGTTTCTGTTTGACCTGCAGTGGTTTCTACAGATTTTCCTCACTGTCAGTACTGGCATCATTCTCATTAgcatgaaattatttatttatttatgatattcTTTCTCAGCATTGTTCaatttttatggtttttttttattattatttttgaaataagACTGTAGTGAGGGATCTTGACTGTGCAGGGTGGTTTTTACTTTatagaaaagtgtaaaaaaaaataattacaaaagtaGTTTTGAtggtatatatatttttgatagaaAGTAACAGAAGAATTGTGaaatgtgatgtaaataatataatctTATGTGTCAAATGTTCGTCATGCATATAAGCCTGATGCCTATCTCTGAGACACGAATAAATAGCAGGCATGTTTTATTGAA

Function

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579694.1 lncRNA downstream 11088 19117849 ~ 19119020 (-) True LOC117599228
TU304768 lncRNA downstream 11543 19117952 ~ 19118565 (-) False LOC117599228
TU304757 lncRNA downstream 190326 18939482 ~ 18939782 (-) True G257471
TU304741 lncRNA downstream 193717 18934897 ~ 18936391 (-) True G257458
TU304683 lncRNA downstream 266986 18809063 ~ 18863122 (-) False LOC113530357
XR_004579693.1 lncRNA upstream 15817 19158291 ~ 19178092 (-) False LOC113530339
XR_004579692.1 lncRNA upstream 15817 19158291 ~ 19163160 (-) False LOC113530339
XR_004579691.1 lncRNA upstream 15817 19158291 ~ 19163160 (-) True LOC113530339
TU304796 lncRNA upstream 16230 19158704 ~ 19177957 (-) False LOC113530339
TU304813 lncRNA upstream 46203 19188677 ~ 19231641 (-) False G257518
XM_026920189.2 mRNA downstream 2495 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA downstream 2495 19119031 ~ 19127613 (-) True si:dkey-21c19.3
XM_034311652.1 mRNA downstream 65635 18936577 ~ 19064473 (-) False lrp1ab
XM_034311653.1 mRNA downstream 65635 18936577 ~ 19064473 (-) True lrp1ab
XM_026920788.2 mRNA downstream 426184 18693407 ~ 18703924 (-) True idh3g
XM_026920221.2 mRNA upstream 1263 19143737 ~ 19148012 (-) True fitm2
XM_026920207.2 mRNA upstream 89372 19231846 ~ 19251695 (-) True ada
XM_026920203.2 mRNA upstream 167438 19309912 ~ 19319756 (-) True gdi1
XM_034311884.1 mRNA upstream 191651 19334125 ~ 19363567 (-) True LOC113530330
XM_034311655.1 mRNA upstream 228213 19370687 ~ 19387041 (-) True LOC113530570
trnak-uuu_17 other downstream 1572 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 65526 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 616851 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 829421 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 1216831 17893081 ~ 17913277 (-) False kcng1
XR_004579690.1 other upstream 228213 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 473053 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 958525 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 961300 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 967989 20110463 ~ 20119949 (-) False mlh3

Expression Profile