RNA id: XM_026920221.2


Basic Information

Item Value
RNA id XM_026920221.2
length 2867
RNA type mRNA
GC content 0.37
exon number 2
gene id fitm2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19143737 ~ 19148012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCGGAAGTGACTCATTCATGATCTTTCTTGTCATTGATCTTGAAGCTGGTGTTAATTCTGTTTAGTTGTGTTGGGACACAATGTCTGCGTTAAGCGGCGTCGTGAATAAATCGCTTCCTTTTCTGGTATTTAATGTTACAGTTGCGCGCAAATATTTGccgttgtttttctttgctgtttcaCTTGGAGGATCATTATTAAAAGAACTGGAGTTTGTGCCGAACTCTTACTTCAGCCACAGTAGAAACCTTCTGAACGTATATTTTGTGAAATTCTCCTGGGGATGGAACCTGGTCCTGTTGCTACCGTTTATATTTCTGTCCAACTCCTACAACAGAAACCTCATCTTCGTGTCCAAACGCCTCACATCTCTTGTGGTAGCCACAGCCATTTGGTACTCCTGCACTGAGACTTTCTTCTACATTGAAAATATCACAGGAGCATGCTACAAGTCAGACAACTTGCAAATGGTCCAGGAGGATTTCAGCATAAAGGCAGAGTGCAAAAATGCCGGCCACTTTTGGGACGGTTTCGACATATCCGGCCACTCCTTCATATTATCTTATTCAACACTCATAATTGTGGAAGAAATGGTTCCCATGCTAAACCTTGTGCAACACTACCAAAACAGATCCATCATCCTTGATGCCCTGTACCTCGCACTCAATGCTATCGCGATCATCTGGGTGTGGATGTTTGCTTGCACCTCGGTGTACTTCCACAACACGATCCAGAAGTTTCTGGGCACTTTGTTTGGCGTGTTGGGCTGGTGTGTGACCTATAAGGTTTGGTACTTGAACCCATTTTCACCAGGACTCCCTCCTCGCCCGAGTGACCATAAACAACGACTAGACTGAAGAGTTTACAACGACTTGAAATATTGCAGTGGAACAAACTGACCTGCAAAGCTATGACTCCAACCTTTTGACCAGGGTTATTTGTAGGTTCACTACATGTgttgtttgtccttttttaaaGGTCGTTTGTGACCAAAGGATTTGTGTGATTGTCTCATGGAGGTGGTTGGCAGCTGGTGTTCCAAAACAGACTCTGTAATCGGAAAGCGTCGGCATTATCTAAAGATTATTGTTGCCTTTTAAAATAAGTGGCCTCAGATGTGGGATTCATGAAATCTCCTCAGTGTGCAACTTTATATATGTTTGCATACAATCAGTGCTTTAAGCATGTGTCCCAAATGCTATAATGTCAAGTTTTCTTATTGGTGCatcagccatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaatccataacaCTAGAATGCACAGTAACAGTTCAAGTAAAACTTGTTGATAATTATTATGTTCATGTTGTACAGCCTGTAGCtgagatactgtgtgtgttacccataatgcactggaAGGAAAGAGATTTAAAGTGTAGAAGACTGAATAAAGTTGGCTAGGTTATAtttgtttataccacagcaatgtcgaattcttgattctgattggtcagaaggtgttgatggaTGTTCATTTTcaggctgcaaggcaaattacaggtttaatTACAGgtttaatgtgctctttctaatacattatcgtttctatagcaacagctaattCATAGAGACTTGTACGACGGACACTTCACATAAACGCATTGAAAAACATGAGCAatcgctgatatggtgaagttttgtgtaaggagtctccagtgtcagtgttttctgtaacagtctgaggtaaagttgtaattttatgttttccaaaacaaaagaggacaagttgtgttttttcatcttattaattttaagtaagagaaacattaaatggaactataaaataataaaaaatatcgCATGTTCTTTAATCAATGAacaattgttagcattggcaaattgctgatataagatgaataaaacacttcaggaattgttattgttattgggaaataatcaacttcaagctTGTATAATCAActacatcattgattattttcccataacagcgtgctctgttgtgttttattccattcttAGTGTCCTTTAGTGGCTTGCAGTCAGGTTTAGCTGAGTGCATTGACTTATGTAGAGCACTGTCCTatattatttgttaattatCCTAATATCTATCTACAAAATAGGTAGCTACAATagttatttttgcttttctcgCTACTCTCACTTTTTGATTGTGTCTAtacttatataattatctaCGACGTGTTATGTTTTGTCGATGATTGTTCATTGTTAGTAGATTCCTATCAAACAGTAGAGTTTGGGTTGTCGCCTGATTGTCATTTTGTTGTAACGTAATATGTGTTTTGTGTAAGTGTTTGCCCTTACGATCGTTTCAACTGCTCAGTTAGTTATTGTTATTGGCTGAGTATTATTTAGACTTGTGTCATGCGTTACATATGTTTGCAAATGCAACTCATCATAAAATTACCTCTGATTATAATGCAGGTTTTCCTCTTGAACGTTGTGCGATTATAGTTTTGGAACATCAATTGAATACTTACGTTACATGTTATGTTACATATTATGACATTTTATGACTGCCTTTGTGACTAAAAGTATTGAATTGTCTGCCTTTTAGACATTTGTTTGTCTATTTCAACTCAACTCAGACCTAACAAAAGTGGCTTGTCTTGATTAATCCTGTTAAAGGATTCAGGTACTAAGCATGATGCAGTTATAGATAAAAGATATATTTATGAGAGTGAGACATGAGGAATGAGATATGTTTCTGGGATTTTAAGGGGTTACTCTTTTAGttgtatattaattataatcattGAGCTTTTATGATAACTTATATTGGGGACCTGACTGAATGAGAACATTACCATGTAAAACCTGCACAAGTATTAAAAATCTCATCATTTTTTGGC

Function

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0019915 lipid storage biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579694.1 lncRNA downstream 24717 19117849 ~ 19119020 (-) True LOC117599228
TU304768 lncRNA downstream 25172 19117952 ~ 19118565 (-) False LOC117599228
TU304757 lncRNA downstream 203955 18939482 ~ 18939782 (-) True G257471
TU304741 lncRNA downstream 207346 18934897 ~ 18936391 (-) True G257458
TU304683 lncRNA downstream 280615 18809063 ~ 18863122 (-) False LOC113530357
XR_004579693.1 lncRNA upstream 10279 19158291 ~ 19178092 (-) False LOC113530339
XR_004579692.1 lncRNA upstream 10279 19158291 ~ 19163160 (-) False LOC113530339
XR_004579691.1 lncRNA upstream 10279 19158291 ~ 19163160 (-) True LOC113530339
TU304796 lncRNA upstream 10692 19158704 ~ 19177957 (-) False LOC113530339
TU304813 lncRNA upstream 40665 19188677 ~ 19231641 (-) False G257518
XM_026920220.2 mRNA downstream 1263 19130108 ~ 19142474 (-) True LOC113530333
XM_026920189.2 mRNA downstream 16124 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA downstream 16124 19119031 ~ 19127613 (-) True si:dkey-21c19.3
XM_034311652.1 mRNA downstream 79264 18936577 ~ 19064473 (-) False lrp1ab
XM_034311653.1 mRNA downstream 79264 18936577 ~ 19064473 (-) True lrp1ab
XM_026920207.2 mRNA upstream 83834 19231846 ~ 19251695 (-) True ada
XM_026920203.2 mRNA upstream 161900 19309912 ~ 19319756 (-) True gdi1
XM_034311884.1 mRNA upstream 186113 19334125 ~ 19363567 (-) True LOC113530330
XM_034311655.1 mRNA upstream 222675 19370687 ~ 19387041 (-) True LOC113530570
XM_034311656.1 mRNA upstream 222675 19370687 ~ 19386537 (-) False LOC113530570
trnak-uuu_17 other downstream 15201 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 79155 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 630480 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 843050 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 1230460 17893081 ~ 17913277 (-) False kcng1
XR_004579690.1 other upstream 222675 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 467515 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 952987 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 955762 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 962451 20110463 ~ 20119949 (-) False mlh3

Expression Profile