RNA id: XM_026920224.2


Basic Information

Item Value
RNA id XM_026920224.2
length 1122
RNA type mRNA
GC content 0.47
exon number 5
gene id r3hdml
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19161213 ~ 19165261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGAGCTCCTTCCACTGCAGCACCATGCGTGTGTGCTGCAGTCACCTGGTCTTGGCTGCCATCTTGTGGGCGATGCCGTGCACCAGAGCAGCTGTGGCTCTGACCAACACCACAGAGCTCTCTCCCCTCACTGTGGCTCATTTTGGGATTGAACTGAGCTGGAGGAACAGGAGCAGCAGCGATGTGCCTCACAGCCGGAGGAAGCGCTACATTTCCTCCAAGGATATGATGGCTTTGCTGGAATACCACAACCGTGTGCGATCTCAGGTCTTCCCACCTGCAGCAAACATGGAGTATATGGTGTGGGATGAGAGGCTTGCTAAATCAGCAGAGTCCTGGGCCTCACAGTGCATATGGGATCACGGGCCACCACATGTCATGAGGTACACAGGCCAGAACCTGTCCATCACCACTGGAAGGTATAGATCAGTCATTGAGCTGGTGAAATCATGGCATGATGAGAAGTATTCATTCTCCTACCCCAACAGATGCACTGGCTCTGTTTGCACCCACTACACACAGATGGTGTGGGCCAGCACCAGTAGGATTGGGTGTGCCATCAACAGGTGTTCAAATATGTATGTCTTTGGTGCTACATGGAAACAGGCCACCTTACTGGTCTGCAACTACTCCATCAAAGGTAACTGGGTGGGAGAAGCTCCATACAAGACAGGAAAGCCTTGTTCAGCTTGTCCTTCTATTTATCGTGGATCATGTAACAAGAATCAGTGCTCCACATCAAAACCCAGAAAAAAGCTCAAGAGGTTTTAGTCACACTGATTGAAGTGAATGATTTGTGACTGACAAAAGAACTTGGAAGCACATTTTTTGTGTCGCACCACTATTAAATCAGTTGAtttcttttgtaaaatattgcatttttacacGTTTTATACTGCAGTTGAACTAACAAATCGTCACACACAGACCCGCTGATTTAACTGTTGTAGTCATCCCAAGAGTCAGTCCTGTGACTCTGTTGTTGTCTCTTGTCCTGTCCCTGGACTGTTTGCACTGTTTTGTATGTTTGCATTACTGTAAGAGTGGCATTGCCGTTAGGTTCACGTTGAGAGTTAAGCACTTTTATGGTTTGTGTACACCCAATAAATTTTCTAACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304438 lncRNA upstream 42680 19117877 ~ 19118533 (+) True G257199
TU304435 lncRNA upstream 95080 19065854 ~ 19066133 (+) True G257196
TU304354 lncRNA upstream 224371 18909837 ~ 18936842 (+) False G257127
TU304359 lncRNA upstream 224794 18891889 ~ 18936419 (+) True G257127
TU304358 lncRNA upstream 224794 18895857 ~ 18936419 (+) False G257127
TU304467 lncRNA downstream 33285 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA downstream 38075 19203336 ~ 19222505 (+) True pkig
TU304478 lncRNA downstream 67742 19233003 ~ 19235261 (+) True G257235
TU304475 lncRNA downstream 75851 19241112 ~ 19241568 (+) True G257232
TU304477 lncRNA downstream 77924 19243185 ~ 19245707 (+) True G257234
XM_034311662.1 mRNA upstream 43650 19091010 ~ 19117563 (+) True rbms2b
XM_034311663.1 mRNA upstream 43650 19091014 ~ 19117563 (+) False rbms2b
XM_034311661.1 mRNA upstream 43650 19091017 ~ 19117563 (+) False rbms2b
XM_034311666.1 mRNA upstream 189965 18969994 ~ 18971248 (+) True LOC117599226
XM_026920462.2 mRNA upstream 226894 18879864 ~ 18934319 (+) True fmnl3
XM_026920201.2 mRNA downstream 2040 19167301 ~ 19187959 (+) False hnf4a
XM_026920199.2 mRNA downstream 16705 19181966 ~ 19187959 (+) False hnf4a
XM_026920202.2 mRNA downstream 17091 19182352 ~ 19187959 (+) True hnf4a
XM_026920210.2 mRNA downstream 25511 19190772 ~ 19194858 (+) False ttpal
XM_026920212.2 mRNA downstream 25624 19190885 ~ 19194858 (+) False ttpal
trnae-cuc_34 other upstream 128225 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 249499 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2040272 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2652833 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2765001 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 313041 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1225548 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1344983 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1737844 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1737886 20903147 ~ 20905073 (+) False ubxn10

Expression Profile