RNA id: XM_026920237.2


Basic Information

Item Value
RNA id XM_026920237.2
length 5481
RNA type mRNA
GC content 0.38
exon number 7
gene id tmem269
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19634054 ~ 19651590 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTGCTATGGCTTTAAAAAGTGTCGCGCTGAATTCGTGCACGCCATTGTTTCTGACAGGTAATAGGAGCACAACAAGTGACATAACTGCACACTAAGACTCTTTTTGGTCGTCGAGGAAACAGTTAAAGGTTGaaaaaagggatttttttttttggctggagAAATAAAGTCCACTTGGAGACGCGACAGTCACCAGTGTTGACTATTTTTAAAGTCTTTCTAGCATCTTTGCAGGTCCTTACCGGTGCTGTGCTGCGCATAGAGACTGAAACGACCACCATGATCCTGCTAACTCCATCCTCTGGCATCTCTGACACTGGCTTTACACACTCAAACGAAGGGAGGTAAAAGCAATACCAGCATCATCTGTTGCACTGTCACCTTTTTTAAGCGGTGAGCCACCGAACATTTCCTtctatacataataataatttggctgtatgttataattttttatttgttttgccaACAATATGATGCATAAGCAATTCATTATTTACTGCTTTCTAGCTAAACTGTATTACTCTAGGGATACCACAGTTTATTACATGAATTCACCATTTATCTTTAAATTTATACAAGCAACTGAATACACCAGCCAATACTGGTATTAAATGATAGCTGCACATGATGTagttgtttaaaaaacatgccATGCAGACTGGCTAACATTTGTCCTATTTCTCATTAGGCCTCTTAGAATGACTTCAGTATTCACCAGCTCCACAGGCAAAATGTGTTGTAAGTTTTAGCTGTACTTTCAAATCACGTGTCTGGTGAGGTCCGAACAAagtttacaaaaaacaaacaaaagtttaaattaaagtcGTTACATGCAGATTTTTGGTGAATGATGTGCTGTTGGCTTGTGCTGTGTCTGATTGTTTTCTTTCAGATGAAGAGTCGCTTGCAATCGACTGGCTTTGGAATCACGTCAAGTTCAGGTTGCAAAACGCAATAGTAGGAACCCTGcattaaacttttttaatgTCTGTATAGCTGTTaggtatattttttaaaaacaagattTTAGATGATGAATGTGTCACTTAGCTTACATGTTCTCTATTCTCACACTTAAATCATTCACTTTCTATTGAACAAAAGCCATTTCTGCATGTGTCCTTGCATGCCTCCAGTCTACCCCCATCTGATAAAAATGACGTTATTGATAGGGAATAAAggtgtccttttttttctcttcattgtTTTGTGTTAAAGGAAAATGGCAGATCTACTGTGCATAAGGATTCTGTTATGTTCTGACAATGAATAATATGATAAACAACACTGGAGTCAGTTATTAGATCTCCAGACAGAATTATAGATGACAGAGCTCTCCTTGACCAAGCATACCTTATTTTAATATAACCTGTGTCTATAGCTTTCTATGTCTTTGTGCTTGTGAGAATTTTGGACACATTTTCACAAGTCCTGGAAGTGCAGACAAAGCAGTGGCATTCTGGTCAAGAAAATTGCCATCTATATTTTTGTCTGGAGTTTAAGTTACTCTTTCTGATCATGTTTAGGGTAAAATATCACTTTAATGAAAATGACTACATTTGAGGTTTTATGCTAAACTGTGAATAGATTATGTCTAcagcttttttgtgtgtttaattgtgtgtatgtgtgtgctccattagcaaagaaaaaaaaaagattagccAGCATACGAAGAActccatttacattttatacccACTCATTAGCTTAAGGACAAAGAACTCTTTGTATATCTTCATTAAAAATCTTTGCAGCGTTTCAGCGGCACCAAGTCAGAGAGTGGTTTTAAGATGCCAAGAAGAGCCCTGTtgtgtttaatcttttttttccccctaaaccATTTACAGTTACGATCCACCTTTCTTTTCACTGCAAAAAGGACAGTGGTTATCCAACGCTCTCAACAATGCCATTTCTGAACATTGTGTACTATAAATATAGCTTGTTATTATACACTTATTTATATGCATCACTACAAAATTGGCAGTGGGGTTGCCTAAGGAAAAATCACAAGAAATGAGTTTAGTAGATTTTCTTTAACAGTTATAAAGATTGCTGGATTAAATAGCTGGTAACAAAAGGCTGTGTGACCCAGATCAGTGGCTGTGCATAATTTAGCTATCTAATGGGAACTGATCAGGATTTGACATCTGAAAAGATTTATTCATATTGCATTGTCATGGCACCACTgatcattttttattcttaaaacaTCTGGTTTCTATAGTCATCTAAGCAGTACTTACAGTGTGGGGGAATAAGTATTTGTAtacttttgtttctgttgtttaatATACTTCCAATGTATGTattcacttcaaatttacacactttataGGGAAAAAACATTCAGACACTGTATTAAAAAGAATGTACATGGTGTCATTATAAAGGACAGTGTCATGGTTTGGGAAGATTAGGAAAAAGCTTCAGAGCAAGCAAAGACCTTTAACATTCCTGTTATTATAATTGGTtcgataatatgcaggtggaaagttcatggaaccacaactaattGGCCCAGGACATGTGAGCCACAACACGGTCTCGTGATAGAGGTAAGAGGAAGGTAAGAGGGAAGCCAGCAGGAGCtcaaaaagagttgcaggatgacctgaaagcagtaAGGtcaacagatacacagagaatATTAAGCAATGAACTTCACCACAGTCATCTCTGTTCCTACATGTCCATTTCTTGACTTTAATCCCAATGAACATTtttggaggattttgaaattgtgagtCCATTGTGAGTCCTCGTAACCTAGGAACTTTGAAGTTGATTTTCCAAGAGGAATGGACCAAAATTGTGCCAGAATTCTGCAAAAAGCTAATCACTTTTTACCATAGACATCTCAAAGCAGTAATTGCCAACAACAGCTTTACAACAAAGTATTAATGTTGGTAATTTTTGGTATCTGAATAATGTttggtgtctgtttttttttttttaacatatctttgtttatgcttctgaatgcatactttttttgtttgaagtggatatatgcactggaagtactgtatattaaacatcaaaaacaaaagagtcttgctacttatttcccctcactgtagtctgagcagcttttatttactgtgGTATTGGTACTTGGCTGTTACAAAAAATCCGTTATAACTAATTCACTAATACTTTTTCACTGTATGTACAGCTGAGAATTTTGCATGTGATATTCTGATCGTGGGATTAGTTATGTGGAGAAGACCaagctttaatattttaaatgtgtattacaCCGCAGCCCTGTTAAAATCTCACATCTTGATTGGTTAGAatttgttgattacttttctataacagcacagctcaggCAGTAGTGCTGACTGTAGTTCAAATCATAGGTGTGAATTATTGCGCTGGTTCTAATAGTCAGTTGTTTCTATAGTCAAAAAATGTACtcaaaggaataaaacaattcatgaagtgctgttattggaaaataatcaactttgtggtttACCTGTTTTGTCAGACAGAACCATATGATTCCAAGATCGTGTTAACATTAGACCAGATGCTCAATGACTCTAGAGATCAATTTGAGATGGGTTATGCTAGTACTGTCTTTCCTTCCTCTAATGACTTACTGTAAAGTGAGTTCTTTTACATAAAGTAATTGGATGCCATTCTCATCTGACTTAATGAGTTGTGAAATTTTTGTTACCCCTACCCTGTTCTTTAAACAGTTTTGTGTTCCTTGAATATGATTTGTTAATGAAACAAGCTTTTCAAGAACATTTCAAGAAccttcttatttttctcatgtAAGCCATCCATGCTTTATGCATGGTGGCAAGATAAGGAAAAGATGCTGTTATTTCCATTTCTGTGCAGCTAATATTACAACATTTTTATTGTATGTaattgtatgtatgttttatggCATGTTATGACTGATaattttctgggttttttttctgtatatgaCAGAAGCTCTACTTTTTGgcaggagaaagaaaacacattttgttttttccaaaaaaaaaacagcaccttAATTTTTTCTTGGGGAAATATTTGTGGAGAATGTTGTAGGGATGTGCAAATATGTCAAAGCATTAGATAGATAAATGTAACGATTTCCGGGCATGTATGTGCGTATTGTATAAATTACATCCAATGATGACCTGGGATCAGCTTAGCGCCTGACTTCACACATTTGTACCTTAAGCTCATCTCATAGCAGTGTAAAAACAACAGCCGCTGTGTAATCATTACCCTGTTTGGTCTCAGGCTTTTTCCAGCGCACCAGCAAACTGTTTCTAAGCAAACAGGCCAGTTGGGTCCAGCTCAAAGAGTTTGCCCGCAAAAATGCCGCCAATGCCTTGTCTGTTGCCAACATGGTCATGGGGATGGCCTCCATTCTCAGCAGTCTCAATGGGCGCCCTTATGCTGCATGTTGGCTGGTGCTGATTGGTTACCTGCTGGATTTGGCAGATGGTGCAGTTGCCAGGCAACTGAACGCTTGTTCGGCATTGGgAGCCAAACTGGATGATTTTGCTGATTTCACAACTTTTGGAATAGCAACATCACTGCTCTTAAGGACTCCCAACATCCTGGATAACATCCTCTGCATGTGCTACATGTTGTCTGTGTTTATTCGGCTTTGTTTCTTCTCCAGTGGCATTCCTTTCATGTATCGTGGCCTGCCGTGCATCTACTCATCCGCCATTCTCGCCTGCCTGTCTCTACTCACTGGAGGGAACATGGCCGTGCTCCGGCTCACTGCTGTGGCCATGATCCTCTTCATGGTCAGCCAGACTCTTTACCCTCATGACCGAGTACTGGAGTCACAGGcctggaagaaggtggtctatGCTGGAGGTATTAttatggtcttctgctcttcATTCCCTCCTGTGTGTCTGTACTATCTGCTATGGTCAGTTTCCTACATTTTGTTCCCAATGTCCCTATGGAGCTGCAAAGTGTAACGGGCTGTGATGTCTTGTCCAAACTACGACACTCCAGGCTTGAAGAAAGCCCATGTGGCCCAACAGAAGTGTCTGCTCTTTGCTGCCTTGGAGTATCAAACCCTGCTCAATCCCAGAAACTCTGGACATTGTATGCTGCTTTTTTATTGTTGAGGTGATGAACTTTGGGTTGCAGTGAGGAAATCTGCCTAATCTAGAGGACTGATGGACTGACGgtgaaattatttcattaaaatcgGTTTCTAAAAAGGCTGACCACAAAACGCTTTTCTACTTGGGAGAACTGTgaactgtgtgttgtgttcacaGAGGTCACTGATGTGTGTCGCTCTTGAAATGTAACAAGGATTCCATCACAACTGCTGTGGGTTGATGATATTTtggtgaattttattcatgtcGAAAATAGATGAGAATAACATCTTGTGTATATGTACCATAATTGGGATTTTCATATTGGTAGatcagatattttattaaaagggaaataaaaacagcagctaAAGCATGA

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 19375 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 42924 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 52372 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 154322 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 168718 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 399832 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 477316 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 492436 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 662773 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 712466 20364055 ~ 20373180 (-) True LOC117599243
XM_026920184.2 mRNA downstream 12441 19485849 ~ 19621613 (-) False magi3a
XM_026920182.2 mRNA downstream 12444 19483093 ~ 19621610 (-) True magi3a
XM_026920190.2 mRNA downstream 152458 19466628 ~ 19481596 (-) True LOC113530319
XM_034311667.1 mRNA downstream 196420 19431451 ~ 19437634 (-) True LOC117599227
XM_026920192.2 mRNA downstream 204080 19403660 ~ 19429974 (-) True LOC113530320
XM_034311654.1 mRNA upstream 9044 19660633 ~ 19777934 (-) True hspg2
XM_034311925.1 mRNA upstream 143465 19795054 ~ 19803145 (-) False LOC113530632
XM_026920803.2 mRNA upstream 143465 19795054 ~ 19803144 (-) False LOC113530632
XM_026920801.2 mRNA upstream 143465 19795054 ~ 19803144 (-) True LOC113530632
XM_026921242.2 mRNA upstream 152229 19803818 ~ 19819735 (-) True galnt6
TU305224 other downstream 12494 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 247013 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 505518 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 569472 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1120797 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 449410 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 452185 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 458874 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 600581 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 1179239 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile