RNA id: XM_034312049.1


Basic Information

Item Value
RNA id XM_034312049.1
length 663
RNA type mRNA
GC content 0.50
exon number 6
gene id si:ch211-66i15.4
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17739271 ~ 17746529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGCATGCGtcactctgattggtcggaagctCATTGGCGTTCACTTGAAAGATAACATTCACCTGGTTACCATAGTTACTGCTAAACAGGAAGTCAATGGCGGCGCGCAACAAAGCTACTGCGGTGGCATTTGGGAGCTGCCAGGAGCGGAAGATGATTCCAACTCACGGTGCACCAAATCGCATGGGGAATGAGCTGCTCACATTGCAGCGTTCACCGACGCCTGGCCCTGGTTGCTATGACAGCCATGTGACAGTCACTCCATCACCCCAGAAATACCAGCAGGACTGGAGTGTGTCACAAATGTGTTCTCCTGGAAAAACATCAGTCAACTCCACCACACCGAGGTTTACGTCCAAGTCTGCTACAGTGAACTCCAACCCTGGaccTGGAGCATACGTGCTTGATGGCCCATGCAATCAGAGGGTATCATGGCCGATGAAGTTTGGCTCACCAGACTGGTCCCAAGTGCCCATGCTGGAGAGAAGGGCACTTCGCACAGAGCTCCCATGTGACAAGGAGTTCCTGAAACATCGCAACAGAGTAGCATATCTACGCTTGCACTATTCTTGAGTTTGCAGGAACAGTGTATTGTGCAAATCTGATTTAGGATCCGAGCACATcgttaaataataattaaattagatACTGGCATTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303666 lncRNA upstream 10218 17727571 ~ 17729053 (+) False LOC117599208
XR_004579653.1 lncRNA upstream 10248 17703087 ~ 17729023 (+) True LOC117599208
XR_004579654.1 lncRNA upstream 10248 17703087 ~ 17729023 (+) False LOC117599208
XR_004579655.1 lncRNA upstream 31076 17703087 ~ 17708195 (+) False LOC117599208
TU303542 lncRNA upstream 68668 17667717 ~ 17670603 (+) True G256475
TU303711 lncRNA downstream 625 17747154 ~ 17747710 (+) True G256627
TU303749 lncRNA downstream 43982 17790511 ~ 17790906 (+) True G256660
TU303824 lncRNA downstream 131084 17877613 ~ 17878486 (+) True G256726
TU303869 lncRNA downstream 196622 17943151 ~ 17943355 (+) True G256771
TU303870 lncRNA downstream 198366 17944895 ~ 17945099 (+) True G256772
XM_034311767.1 mRNA upstream 62967 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA upstream 62967 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_034311768.1 mRNA upstream 62967 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_026920718.2 mRNA upstream 112213 17427302 ~ 17627058 (+) True plxna2
XM_034312065.1 mRNA downstream 446668 18193197 ~ 18240912 (+) True LOC113530861
XM_026921224.2 mRNA downstream 480334 18226863 ~ 18240912 (+) False LOC113530861
XM_034312066.1 mRNA downstream 482548 18229077 ~ 18240912 (+) False LOC113530861
XM_026920971.2 mRNA downstream 600246 18346775 ~ 18351473 (+) True pfdn4
XM_026920076.2 mRNA downstream 743952 18490481 ~ 18497402 (+) True cd40
XR_004579712.1 other upstream 618330 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 1230891 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 1343059 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 1344271 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1509865 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1133039 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1286388 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 1731773 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 2644280 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 2763715 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile