Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026920247.2 |
| length | 1375 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 9 |
| gene id | dpm1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 10562324 ~ 10568759 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0035269 | protein O-linked mannosylation | biological_process |
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity | molecular_function |
| GO:0004582 | dolichyl-phosphate beta-D-mannosyltransferase activity | molecular_function |
| id | description |
|---|---|
| K00721 | DPM1; dolichol-phosphate mannosyltransferase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU299029 | lncRNA | downstream | 165584 | 10396395 ~ 10396740 (-) | True | G252610 |
| XR_004579740.1 | lncRNA | downstream | 273640 | 10244041 ~ 10288684 (-) | False | LOC117599279 |
| TU299250 | lncRNA | upstream | 86555 | 10655314 ~ 10655522 (-) | True | G252783 |
| TU299304 | lncRNA | upstream | 141636 | 10710395 ~ 10711491 (-) | True | G252833 |
| TU299329 | lncRNA | upstream | 210226 | 10778985 ~ 10779600 (-) | True | G252856 |
| TU299332 | lncRNA | upstream | 213376 | 10782135 ~ 10782588 (-) | True | G252859 |
| TU299403 | lncRNA | upstream | 296601 | 10865360 ~ 10865700 (-) | True | G252920 |
| XM_026920842.2 | mRNA | downstream | 853 | 10548390 ~ 10561471 (-) | False | adnpb |
| XM_026920843.2 | mRNA | downstream | 1062 | 10548390 ~ 10561262 (-) | True | adnpb |
| XM_034311542.1 | mRNA | downstream | 32607 | 10497718 ~ 10529717 (-) | False | camkvl |
| XM_026920074.2 | mRNA | downstream | 32607 | 10497718 ~ 10529717 (-) | True | camkvl |
| XM_026920773.2 | mRNA | downstream | 66197 | 10480490 ~ 10496127 (-) | False | uba1 |
| XM_034311722.1 | mRNA | upstream | 1350 | 10570109 ~ 10617516 (-) | True | LOC113530527 |
| XM_034311721.1 | mRNA | upstream | 1350 | 10570109 ~ 10605288 (-) | False | LOC113530527 |
| XM_026920643.2 | mRNA | upstream | 1350 | 10570109 ~ 10605288 (-) | False | LOC113530527 |
| XM_026920647.2 | mRNA | upstream | 40134 | 10608893 ~ 10619665 (-) | False | LOC113530527 |
| XM_026920646.2 | mRNA | upstream | 40134 | 10608893 ~ 10617505 (-) | False | LOC113530527 |
| XR_003403171.2 | other | downstream | 92790 | 10460694 ~ 10469534 (-) | False | usp21 |
| TU298725 | other | downstream | 532331 | 10029492 ~ 10029993 (-) | True | G252373 |
| XR_003403155.2 | other | downstream | 1983724 | 8566656 ~ 8578600 (-) | False | ttll10 |
| TU296847 | other | downstream | 3052577 | 7476274 ~ 7509747 (-) | False | ctnnbip1 |
| TU296070 | other | downstream | 4254561 | 6304844 ~ 6307763 (-) | False | rps26 |
| TU299234 | other | upstream | 67764 | 10636523 ~ 10638718 (-) | False | sinup |
| TU299470 | other | upstream | 445205 | 11013964 ~ 11015630 (-) | False | LOC113530950 |
| trnae-uuc_4 | other | upstream | 690284 | 11259043 ~ 11259114 (-) | True | trnae-uuc_4 |
| trnan-guu_24 | other | upstream | 704571 | 11273330 ~ 11273403 (-) | True | trnan-guu_24 |
| TU299993 | other | upstream | 887262 | 11456021 ~ 11462706 (-) | False | LOC113530309 |
