RNA id: XM_034312168.1


Basic Information

Item Value
RNA id XM_034312168.1
length 2564
RNA type mRNA
GC content 0.43
exon number 5
gene id snx21
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14061708 ~ 14067419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacccagcagtGCATGCTTGTCAAAAACAGTGGGGTAGGGGTTCAGTACTGCTGCTTTACTTGTAGCCATGCTCTTATTCTGAAATCTGCttcagcagtctttttttttcttttcttttcccatttGAATTTAGTCTTCTGTATTTCCCTGTGCAAATCAGTGTGGAGCAAATGTGTTGTCTAAAATAGAGTCCAGTCCATAGTCACTGCATGGAGAAGGAAAAGTGTTCCTCCAAAATTTGTAATGCTGGGGTTCAATTTGCAGAAACACGAGAGAGTAACCGCTGCTGAAGCGTTGTCGCCTCCTGAAGTGGCCAAAGTGGAAGAACTTCACCGAAATTAAATGCATGTTCTTCATTCTTGACTTCTGTGTAATTCCCGACATGAAAGAGtttgagctgtgtgtttttgTACTGTGCTGATGGCCTCTAAGCTGCTGGATAGACTTCGCCGCTCGCTATTCAAAGAAGGAGAGCTCCATGTGGACACAGAGGACACCGATGACTTTCCAGAAAGCTCTGAACTTGAGGATGACACAGACAATGTCTCGTCCAGGCTCAGTGGGACGCTCTGCTTTGAAGGTGATGGCGTCCTGGATTCGGAAGATGCAGGCGAAACATCTGGTCCAGACAGTGATTCGGACTGCTTTGCAGAATCCATAGATAACGCCTGCAGCAGCACAGATATAAGCCCCACTGGCCCGACTCTGAAGGGCTCCAGCATGCTCACCCGACAGCTACAGGAGAGCTGGAGAAACCTGCGCACTCGCTGTGTGTTGGAAAAGCTCCTTTTCGAAGTGACTGATGCCAGTGTAGTGCAAGAGGCAAACTCCAAATATGTGCTTTACACAATTCATGTCATCCACTCTGGCACATTTGACAAAACCCCTGCAGTCATTGCGCGTCGCTACACCGATTTCGAGCGGCTGCACCAGCTCCTGCGCAGGCATCACAGAGAAGCCATGGAAGGAGTCCACTTTCCACGCAAGAAGCTGCGCCGGAACTTTGCAGCCGAGACCATTGGTAAGCGGAGCCGTGCATTCGAGCAGTACCTCTCACATCTGCACTCACTGACTGAGGTGCGAGCTTCACCTGCCTTCCTGGAGTTCTTTTACCTGGGCGAACTGCGCACTGGGCAGACGCTGGTGCGTGCTGGTCGCTACGAGGAAGCGCTGGGCACTCTGGTTAATGCGCTGCGCCTCCAGGAGAAACTGGACTCGCCACAGAAAACTCACCGGCTCTTCACACTCTCTGCAGTGGCGAGTTGCTACCAGGAGCTGGAGAGGCTGAGCGAGGCACAGGAGCACTGCGAGCACGCCCTCAACAAACTGGTGCCCTCGATAGACATGCAAAAGATCCAGCAAAAGCAACTCCACCCGCTGCTAGTGCCGCTTCTGCAGGCCAACGTCCGGCTCTCCTGGAAGATCTCCAAGGACAAGCGGCGCTGGGAAGCACTGCTGCATGAGATCCAGGAGCTCGGCGTCGACGTTGAGAATCAGCCCGATTTGAAGGAGTGTATAGTCAAAGAGAACCTATCAGAAAGCGAGGGATAGTTCAGGTCAAACCGATGTAGGGCGTTTAACACTGACGGTAGTGACAGTCATAATGCAAACCGAGGGATTCTTATAATTTGCAGAGGATAATCATATCATAGTAAGAAGTAGACACATACAtaccactattttttttttattatttcattatcatATTTTGCACACTGGTATGTCtaaataacatgtaaataatCACTACACTTATATGTGAGTTTATGCAGtgaatttaaaatcaaaatggtTCAAGCACAGCCTTAGTAGAAATCTAtttttataaagtatttttaaaattgtaccCAAATATTATTGGGTGCAGTACAAAATGGATAATGTTACAGATTTTATGAATGCACATTGATCCAAAAGCATTAAGGGAAATAAGTTGATAGAgaactttaatattttaatgaagtgtttttttacagtttttacctACTAATTTACCCACTAATTTCAGCTATATTTTAGGGTATATTAGGGTACTTCTTGACAGAAATGAAACATTAGagattagggttttttttgctgcacattttattgtataGTGCTACaaatttatatgttttttttgtatttatatttattatttagataaaaaataaatttataatagtATAATCCTACTCTACACTATTGGCAGTTTTTAACAGTTGCATTCCTGTAGTGAAACCTTGCAGCAGTTCCCAAATCAGCAGTCATGTGGTTAAAGGACTGctggctgtatttttttttttttatatatattttttttcctgcagtagtttatgtacagtacatgGTTTTTAGACAATTGTTTTAACTAACTTGCACATATGCACTACACTATCCCCACCACAAAGAAcgttttggtttatttttatcaaTAATGTAGATGTTCAAGTAGAAAGTGAATGAAACATGGTGAAATTCATGCACTCCTTTTTCAGCCACTTTTAGTTACATCAGACATGTGAATGAAttccttttctgttttcattctAATAAAATACACTTAATCTACAAA

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17932 SNX21; sorting nexin-21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301453 lncRNA upstream 6468 14055216 ~ 14055962 (+) True G254644
TU301436 lncRNA upstream 30097 14032116 ~ 14032333 (+) True G254633
TU301262 lncRNA upstream 229739 13827684 ~ 13832691 (+) True G254472
XR_003403196.2 lncRNA upstream 335048 13723365 ~ 13727382 (+) True LOC113530938
XR_004579672.1 lncRNA upstream 339545 13721284 ~ 13722885 (+) True LOC117599220
TU301465 lncRNA downstream 840 14068259 ~ 14068463 (+) True G254653
TU301817 lncRNA downstream 375770 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA downstream 405252 14472671 ~ 14477709 (+) False G254967
TU301815 lncRNA downstream 539660 14607079 ~ 14615274 (+) True G254966
TU301850 lncRNA downstream 554898 14622317 ~ 14673952 (+) False G254991
XM_034311877.1 mRNA upstream 440569 13590465 ~ 13621861 (+) True cables2b
XM_034311876.1 mRNA upstream 440569 13590465 ~ 13621861 (+) False cables2b
XM_026920625.2 mRNA upstream 474689 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA upstream 474689 13574533 ~ 13587741 (+) False ccm2l
XM_026920323.2 mRNA upstream 491129 13509588 ~ 13571301 (+) True xkr7
XM_026920386.2 mRNA downstream 2810 14070229 ~ 14071844 (+) False wfdc2
XM_026920384.2 mRNA downstream 19656 14087075 ~ 14120704 (+) True phactr3a
XM_026920146.2 mRNA downstream 89755 14157174 ~ 14161605 (+) True fam217b
XM_034312076.1 mRNA downstream 137427 14204846 ~ 14258779 (+) False si:dkey-178k16.1
XM_034312072.1 mRNA downstream 137430 14204849 ~ 14264181 (+) True si:dkey-178k16.1
XR_003403145.2 other upstream 1211435 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1677856 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1918903 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1941058 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 2162066 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 2809 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 2850 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 2850 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 602385 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 602385 14669804 ~ 14673952 (+) False G254991

Expression Profile