RNA id: XM_026920289.2


Basic Information

Item Value
RNA id XM_026920289.2
length 2116
RNA type mRNA
GC content 0.44
exon number 5
gene id rnd1a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11926906 ~ 11932495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTTTCTCCAGTCAGCCAGCTGCTAACACTGCGCGGTGCTCATACAGAGTTTACGCGTCTCTGTAAGACTGCTGGAACACGTGAGTGATATTTCGAGGGAGTAGAATTCAGTTTTTCATATAATTTCGTCTCGTTGAGAATGAAGGAGAGGAGAGTAAGCGAGCCGCTGGTGGTCCGCTGTAAACTGGTGTTAGTGGGAGATGTTCAGTGCGGGAAAACGGCTATGTTACAAGTCTTGGCAAAGGACTGCTACCCTGAGACGTACATCCCGACAGTGTTTGAAAACTACACGTCAGGCCTGGAAATAGAAGAACAACACATTGAGCTTAGTCTGTGGGACACATCAGGTTCTCCATATTACGATAACGTCAGGCCACTCTGCTATAGCGACTCTGATGCTGTGCTGCTCTGTTTTGACATCAGCCGACCTGACACTGTTGACAGCTCTCTGAAAAAGTGGAAGACAGAGATCATGGATTTCTGCCCTAACGCACGCATCCTCCTGGTTGCCTGTAAGACAGACCTGCGCACTGACGTGTGCACACTGATGGAGCTGTCCACGCAAAAAATGGCCCCAATTTCTCAAGAACAGGGGTCTTCACTAGCAAAGCAGTTGGGAGCCGAGGCATATCTGGAGTGTTCCGCGTTTACATCAGAGAAAAGCATTCACAGCGTGTTTCGTTCAGCAGCCCTGGCCTGCCTGGACAAGCTTCAGCCGCCTATCAAGCCAAGCCCCGCCCACCGGAAACGCCTCTTGCACCTGCCCAGCAAGAGTGAGCTTCTGAGTTCGTCCTTCAGCAAAGAGAGGACCAAGAGCTGTTCTGTCATGTGATCCAGACTCTGCTTCCTGAGACAGATTGACAGAAGGGCAGTTTTGAATGGAGACAAGAAGTCGTGACCTTTGTTGTCCCCTCCCATCTCTACACACTCAATGTTTTGCCTTTTCAGTTAGTCCATCCCATTTCTTCATCACAAAGAATGGAAGCTGATGACGGTTAATTGATTCTTTTTAATACACAGGTTTATGGTAAATTGCCTGATAACATTTAATTCACATGAACCTCATGCCCTGTTTAATTAAGtgtgctattttttatttattgtgcgtATGTATTGGAGATCTGAGCCTTCCTGTACAGGGTTACCAGATGTTTAATAAGAAACAGGATTAAATGGTTAACTGGTCATGTATGCGAAAGAGAGTGACAGAGGAAGACGCTTATGTGATTTAGTTGGAAGACACAAAAGCGTAAGGGTCATAACTGGGGAAGTTTTAAAGAGCAGCTATAAAACTGACACTTGATGGAGTGTGCAATCACATGTAGGTAGAGAGAACATGCTGACTaccactctgtctctcacatacatacacagacaacAATGCACCTTCTCTTATCCATCTATAAGTCTCAGTAGATGTATAACGAAGAGAACAGATAGTCTGGACAGATCTTGAAATGGCATGAACAACACATGGGAGGTCTTGTGATGGTGGCTCAGTTTGGATGGCTGACCTTAGAGTGGCTGTGGACCTTAGAAGAGCATGTCGGAGCAGGACAGAAGAGATTAGGGGGATTAGTTGAGGAGACAGGATGACATTTTATCCCAGACAAGTCTGATGAGAGATTAGATATATAAGGTAAACCTATTGAACGTGCCTAATTATCTGGCTTGCCTTTTTAAGGCTAccttcttttaatttttaatgatcaAGTATCTCTTAAACTGATGTCTTGTAGTTCTAATTAGCTTATTtggacttttattatttttaaatcaatacaATTTCTCCAATCTAGGGGTGTAGCCACTAtctctatttgtatctgtactccaaatattcatatctgtatttggattttaaccaaaagtgtgtgtggttttgagTGAAACCTACCACTGTGTCCCTTGATACACTGGAAAACagtgtggaaaaaaaggaacactgtagaaatgccagcactgtcagcatggtctgtaaAATCTCCTCACTCAATTCTCCTCACTTCATCAatccagctgttttttttttatttttatgttctttGCGAGATCTGctgggtgtcccaaaagtctccatacataggggactacgTATGCAAGCACCAAgtcag

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300190 lncRNA downstream 22220 11904277 ~ 11904686 (-) True G253538
TU300144 lncRNA downstream 67560 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 148973 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 168976 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 182748 11743950 ~ 11744158 (-) True G253499
XR_003403159.2 lncRNA upstream 211138 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 211219 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 284929 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 459868 12392363 ~ 12393653 (-) True G253843
XR_003403193.2 lncRNA upstream 674046 12606541 ~ 12607682 (-) True LOC113530910
XM_026920875.2 mRNA downstream 10922 11907926 ~ 11915984 (-) True prim1
XM_034312069.1 mRNA downstream 26444 11894478 ~ 11900462 (-) False naca
XM_026920873.2 mRNA downstream 26514 11892151 ~ 11900392 (-) False naca
XM_034312070.1 mRNA downstream 26548 11894478 ~ 11900358 (-) True naca
XM_026920874.2 mRNA downstream 26639 11892151 ~ 11900267 (-) False naca
XM_026920758.2 mRNA upstream 136094 12068589 ~ 12083533 (-) True slc17a9b
XM_026920760.2 mRNA upstream 151490 12083985 ~ 12087721 (-) True gid8b
XM_026920538.2 mRNA upstream 223233 12155728 ~ 12167795 (-) False ptk6b
XM_026920537.2 mRNA upstream 223233 12155728 ~ 12167792 (-) True ptk6b
XM_026920536.2 mRNA upstream 236032 12168527 ~ 12185778 (-) True zgc:194282
XR_003403207.1 other downstream 33904 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 34486 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 358376 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 464200 11456021 ~ 11462706 (-) False LOC113530309
trnae-cuc_33 other upstream 208607 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 226277 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2196721 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 2196721 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 2196721 14129216 ~ 14150581 (-) True LOC113530423

Expression Profile