RNA id: XM_026920292.2


Basic Information

Item Value
RNA id XM_026920292.2
length 5391
RNA type mRNA
GC content 0.50
exon number 21
gene id otud4
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23530494 ~ 23546073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACCAGCAGTTCACAGAAAACGAAAGTGACTCCTAACTCCCTCTCcctgcgtgggtgtgtgtgtgtgccggcTTTATTTGTGTCACTGTTCAATATGTAGCTCAGAAATATACGAATTTCCAGTGCAAACACCTACTTTACTTTCTTATCTCGTCATGGAGAGTGGTGCAGGAGCAAGCATGCAGCAGAACGATGAGAAAAGTGTGGAGAAACTCATGGACGAGCAGCTGAGAGCGAAAGGACTCTACCGCAAGAAGATAGCCAAGGACGGCTCGTGCTTATTCAGAGCTGTGGCTGAGCAGGTGCTGCACTGTCAGAGTCTGCACACGCGGGTCCGGGCCGAGTGTGTGAAATACCTCAGACAGAAACGGGACCTGTATGAGTCGTTCATCGAAGGTGATTTTGAGGAATACCTGCACACGCTTCAGGATCCTCAGAGCTGGGTTGGACAAGTGGAAATAAGCGCTCTGGCTGTTCTTTATAAGCATGATTTTATCATCTATCAGCAGCCTGGAGAGCCTCCAGTGAACATCACGGAGAACGGCTACCCTAATAAGGTATTGCTCTGCTTCCTCAATGGGAACCATTACGACTGTGTTTACCCGATATCTTCTGTCAGAAACGCTGCTCTGTGCCAGTcgaTCCTGTACGAGCTGCTGTATGAGCGTGTGTACGGCGTGGACCGGAGCGTGTTGACGCCAAGCCTGAGGGTGTCCAAAGCAAACAATGAGGCCATTGAGACGGAGGAGCGTGAGAGCAGCGGGGACTCCGACCTGGACGAGGGAGAGGATTTCTGGTCCAGTGAAGCTACAGGCAAGACAGCTGGTGTGAACAACAGGACAGCTTAtaagGGTCGTGGGCGGGGCCAAGCCAGAGGACTAGGGCGAGGCTGCCTGCTTCGTAAGGTGCAGGAGTCCCTGAGCCCCACCCTCTTCAGGAATGTAGAGTATGAAGTGTGGCTGCGCTCAAAACGAGTTCAGCAGAGGAGGGATTTCTGCATGGCAGCCGGGATGCATTACAAGGCTGGAGACAAGTGCCAGgTGCGGTTGAATAATACCGATCGCTTCTACAGTGCCTACATTCAGGACGTCAGCCCTGATGATGGACCTGTCACTGTCTTCATCGAGGAGCTTGGAGAGaagtacaGTGTTTCACTGTGGAACCTGCGCACTCCTTCAGAAGACTCCTGGTCTACAGTGCCggaaaaaagcaaaagacaaaCTGCATCCAGCAGCAACGGGCCCACAGAGCGGGACACCAGACCTGGGAGGAAGCCCATGAGGTCAGTGTCACATGGTCCTACAGCATCCTCAGGCTCCACCCCTGGCAACCGCATACAACAGCAGCATTCTTGGCCCCCGCAGGCCATCGTAGAGCCTCAATCAGTAGGAAAGAATGGTAGCAGCAGgaggagTGATCAGGGCGCAGGGGGGTTGTCTGTGTTGCCTGTAGAGGAAGACGAACATGCGCTGCTGGAGCTCCTGAACAAAGATGAGGAGAATTTCCCGACACTTGAAGCCAGTGCACAGGCTGCTAGTGTTGAAGGGAGTAGAAGAGCTGAGAAGAAAGGCTCCCGAAAGAAAGCTGGCTCAGATACCAAAGAGCAATCTCTGAACCCTATTCACAAAGCAGAAAGAGGAAAACAGGCAAAGAAAGGTTCGGTGGATCAAGACCAAAGAATATCTCCTCCCCCCAAAGAGGAACCGAACCCTACACTTTCCACTACCTTACCTGCCCCCACAGCTCCAAAGTCCACAAAAGCTGCCCCTGCATCCACAGCAGCACCTGCCCGAGTTCCCTACAAAGCATCATCATCTTTGTCTGCTCGCATTCCCCCCATCCAGTCTCAAACTACCCCTGCTCTGTCTACGAGACCCCCGGTTTCTTTCCACACTACCCCCAtccagtcttcaactgcccCTGCTCCATCTACAAGACCCCCAGATTCTTTGCACACTACCCCCATCCAGTCTCAAATTGCCCCTGCTGCATCTACAAGACCCCCGGATTCTTGCCAGACTACCCCCATGCAGTCTTCAACTGCCCCTGCTCCATCTACAAGTGTGGATTCTTTCCACACTACCCCCATAAAGTCTCCAACTGCCCCTGCTCCATCTACAAGACCCATAGTTTTGTTTGAGGATACCTCCATTGAGTCTCAAGCTGCCCTTGAGCCATCTGAAGTGATCCCAGTATCTTCTCAGTCTACCCTTATCCAACCTCAAACTCTCCCTATGCTTGCCACATCTGTACCTACCCCAGTATCCTCTCATTGTACCCCCACCCCTTGTCTAGCTTTGCCCAAGCCCATCCCTTTGACACCACCCTCATTACCCCAGAACTCCTCTCAAACAATTCAGTCCCAAGTCTCAGATCCAACTACCGCAGTAACTACCCCTGTGCCCTTGAACCCTGTTCCAGAAGCTACTACCACCCCTATTCCTTCTCAATCAACCACAGTACCTTTATCTCCAGCCACACCTGCCCCTAACCCTGTATCTACCCCATTATCTTCCCCTTCCTCTGCTCAGACTGCTCCTGCATCCACTCATGCCCTTTCCCAAACTACTTCAGTAACCGCCCAGGGACCTGTCCCTGCACCATCTCAAATTACTTCTGCCGCTGAGGTGTCTGGTTCAGCAGATCTTTCTGCTGCCTCAAAATCTCCTCCTGCTCCGACGGCATCTGAGCAGTCTGATGCAGCTGGTGTACACACTCCTGTCCATGTCCCCCACTCCATTACTCCTCCAGCTCAACCTTCTCTTGCCCCCTCTTACCCTGTTGGGTTTGGTATTCATCTGCCTTATCCACCCTACCCCCCATATCCAGCCCCTGTGCCATCTTTATCTCCAAATATATCTGCCTCCATGCCAGATCCATGTCTTCCTCCTGCTGTCCCAactccatctttctctcatGCTGCCGAGTCCTACCTGTATGAACCTGCAGTCTCCCCTGTTACAGCAGGTTCTGGAGGTGCCATAGTGCCCGATCTCACACTCGCACAGCTTTGCCAAGACATGCTTTACCCCGGTTTTCCCCAGAATGAAAAGGATGAACCTGTCCAGCCTCCACCATTCTCCCGCCACAATACTGGAAAAGACCTGCCAAGTGATACAAGTGTCCTTAGATTCTTCTTTAACCTTGGGCTTAAGGCATACATGTATCAGATGTTGCCTCCAGTTACCTACCTGGCACCACTGTTTCAGGCCTACCACCACATGCAGCTCAAAGTCTCTCCTTCTCCTGTATCTTGGCAACCAGACAACAACTCTAGACCAATTTTTCCTTCCCCCAATCCTTCCCCTGCTGGGAGCACTCCTGTTAGTCATTTCGAGGTAAGGGGCATGGTCCGCACCCCTTCTCCGATGGAAGTCGGGGTGTTCGGCCATCATTCAGTGCCTATGCAGATGCCATTGCCCATTGCCTCCCATCCCCCTGTATATGCAGGTATGCATTCAGTGCCCCCTGCTGGTCCATCACTACAGTATTCTGCCCCTCCCCCCTCTGTAGGGCCTCAGCATCTCTCTGTCCCCCCTCCCCGACATTATGGGATGGAGATCCCCTTGCCGACAGTGCCACCAATAATGGAAGGAGGTCAGGGGGAACAAAGGTCTTTGACTCCACAGGTAGAAAAACCATTTTGGGCAGGTCAAGGTCAACAACATTCAGAGGGTGGAGACATCAAGCCAGGGGCTGTCCCTGTTACCATGGAGAGACAGTACAGTAGTGGAGCTCAAGCAGTTCTTAGTGGTGGTGTGCCGAGTAAAGGGGCGGAGACGACAATGTTGGCCAATGGAAACAGACGAGAGAAGGGTGGTGGTTTTGTAGGATCCTCATTGGAAGACTGGGAGACAGACAAGGTGGAGTTTGGTGATGCAGATCTTAAAACTGGGAGGAGCTACCACAGTCAGTTGTACAAATCTGGAGGTAGGCACAGCCAGGATGACCGAGGAGGATTCAGGGGGCGTGGTTCACGTGGACGGAGagattatacagtatggggAAGACAAGACCACAGAGGGTCTGGTGGGAGGAACAGGGTGCGTGGCTACAATAACACCAGACAGACAGGATACCCAAGCGGGCAGTTCACACCTGCATCCCAAAGCTGACAATCACTTGTTTCTTTTGCTATAAATTCACTTGGAATTGGGTAATAAAAGCTTGAAGCTGTGGTGATTTTTCTCCACGCAGTGAAATATGGAGACGAACACCTTTTGGACGGCGCTAAACATGCACCGTATCTCTCACATGAAAAGCAATGActgcacacacttcacattcaTCTCACTGAGGACGTGAATGTGACGATCAGGACTTCACCCGAATCTCGCTTATGAGCTTTTGTTTACTGGTGGTTTGAACTTTAGACGTACATTCATGGCCTGTTCGAATCAAGTCAGTCATGTAACAGGAAAATGGCATAACTCCAagaccctgtttttttttttgttgcaacagatatatactgtagattttgttgttttttttaaatgtattgttcTCTACTTGTGAAGGAGTGATTCagcaaaaaattcaaaattaccCAATTTGCCACCTCCAAATGTAGTCCATCAGCTAGGACAATATCCCCTGTTTGCTTCTTGAATTCTGCTTTCATACTTGGCAGTTTTTCTCAGAAAAGGTCCTAGCTGGagcacttttttctgtttatatgaagaaaagaaaagcgtTTTATGCAAAATGcccactgtaaccataacaacgctgttaccagtcctagctagtatAAGCTAACTAACTAGTATAGCTTGTTCTTTAggttagatttattattatcagtgatGCAGATGAAATAGTTTGGTGTAactggtgatgaggaggttgtttgttttcgctgtagctttggaggTAGGAAATTAGGAGAATTTGAGCGGCTTGCGTTAAGCCACAGTTCAAGTCGGACGTCTCATCACGTACCAGTGAATGTCCTGAACATACACGTTATTTTTAGTTGGAATATTggcagtgaaatattttcatttcgTTATAAATCTCATATTCGCTTAGATTAATTTTTACCtgcacttttacttttttatgttCTCGCttgcaacctgattggtcaagaggttaaaaaaattaaatcactgagcactttttttcaacttttggAAGGAGGTTGAGGAAGGAAAACAtcaataatagtaatagcagCCTAGGTTATATACCAGGTACACTATATAGGCAAATGTTTGTGGCCACCTGATCATCATGCCCGTATGTGGGGTGTCCACTAGAGGTAACTAATGGGcccaaaacctgttccagcatgacagtgcccctgtgcacaaagcgagctccatgaagacatggtgtgttaaggttggagtggaagaactcgagtgtcctgcacagagccctg

Function

GO: NA

KEGG:

id description
K13718 OTUD4; OTU domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307815 lncRNA upstream 56050 23473913 ~ 23474444 (+) True G260011
TU307813 lncRNA upstream 61437 23468826 ~ 23469057 (+) True G260009
TU307756 lncRNA upstream 168204 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 181557 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 195159 23332680 ~ 23335335 (+) False G259968
TU307905 lncRNA downstream 8523 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 280819 23826892 ~ 23827631 (+) True G260222
TU308086 lncRNA downstream 315569 23861642 ~ 23862570 (+) True G260223
TU308080 lncRNA downstream 321578 23867651 ~ 23869556 (+) True G260217
TU308096 lncRNA downstream 371808 23917881 ~ 23918391 (+) True G260232
XM_026920296.2 mRNA upstream 8679 23510617 ~ 23521815 (+) True slc10a7
XM_026920295.2 mRNA upstream 8679 23510619 ~ 23521815 (+) False slc10a7
XM_026920297.2 mRNA upstream 13010 23510603 ~ 23517484 (+) False slc10a7
XM_034312172.1 mRNA upstream 20841 23507539 ~ 23509653 (+) True LOC113530383
XM_034311682.1 mRNA upstream 23516 23505191 ~ 23506978 (+) True LOC117599230
XM_026920110.2 mRNA downstream 17472 23563545 ~ 23568673 (+) True anapc10
XM_026921416.2 mRNA downstream 26124 23572197 ~ 23583979 (+) True LOC113530971
XM_026920687.2 mRNA downstream 38706 23584779 ~ 23604485 (+) True LOC113530551
XM_034311840.1 mRNA downstream 59031 23605104 ~ 23617167 (+) True rnf150b
XM_026920685.2 mRNA downstream 84520 23630593 ~ 23634770 (+) True si:ch211-149b19.2
TU307780 other upstream 141180 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 146841 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 146841 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 850944 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1218606 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 486154 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 722504 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1078864 24624937 ~ 24634545 (+) False ddx58

Expression Profile