RNA id: XM_026920295.2


Basic Information

Item Value
RNA id XM_026920295.2
length 1443
RNA type mRNA
GC content 0.53
exon number 12
gene id slc10a7
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23510603 ~ 23521815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTCATTCCCTCTAAATGCGCACTACGTAGGGTTTGAGTGAATGACGTATTCTGACTAAGTAGTGACCTATGTGTCAGGAAGTAAGGGATTTGGGATCGAGCCGTTGTCAAACCGACGCTCCACAGTTGGTTACGGAGGGACCGGGGAGAGTTTGGTGAGGACCGGCGGCGGTGTAACGGGACTCCTCCGGTATGGGCCTGTTAGCGCGCGTGCGGAAGGAATGGTTCATTGTCGGTATCGCGCTCGCGATCGCTTCGGCCAAGCTCGCGCCGTCCGTCGGGGTGAAAGGAGGTCCTCTTCGGCCCGAGATCACCATCACCTACATAGCAGTGTCAACCATCTTCTTTAACAGCGGTCTGTCCTTAAAGACTGAGgagttAGCGAGTGCGTTAATGCACGTGAAGTTACATCTGTTTGTTCAGACGTTCACTCTGGTCTTTTTCCCTGTGGCCATCTGGGCTCTTCTCAAAGTCCTGGCACTCACTGCTATTAATGAATGGCTTCTCAaagggttACAGACGGTGGGCTGTATGCCTCCTCCTGTGTCCTCTGCCGTCATCCTCACTAAAGCTGTCGGGGGAAACGAGGCTGCAGCCATTTTCAACTCGGCGTTTGGAAGCTTCCTGggGATCGTCGTCACAccgctgctgctgttgctgttcCTTGGCTCGTCCTCCTCTGTACCGTTCTCCTCCATCTTCTCTCAGCTCTTCATGACTGTAGTTGTCCCTCTTATAGTTGGGCAGGTGTGTAGGAAGTTCCTGAGGGAGTGGCTGGAGCGGAGGAAACCTCCGTTCGGCACGGTGAGCAGCATCGTTCTGCTCATGATCATCTACACCACGTTCTGCGACACGTTCTCCAACCCCGACATCGAGCTGGACCACCTCagcctcctcatcatcatcttcatcaTTTTCACTGTTCAGCTCACATTCATGTTACTGACTTTCTTCTTGTCTACCAGGAAGTCTTCAGGCTTCACAGCAGCAGATTCTGTAGCAATATTGTTTTGCTCTACACACAAATCCCTCACGCTGGgtatcCCCATGCTGAAGATTGTATTCGCAGGCTTTGAGCATCTCTCGCTCATCTCAGTGCCTCTGCTCATCTATCACCCGGCTCAGATCCTCCTGGGCAGCATCCTGGTGCCGACCATCAAAGCCTGGATGAACACGAGTCAGAAGgccctGAAACTGACCAACCTGCAGCCCATCTGAGAGAATTGTGAATAAATTTACCTCACACTGAAACGTAACGGGACCCAAAGCTGACTTGACCTGCAGTTTTCCGTCATTCCCAATGAAGGATGAGGGACGTTTTCCGGGATGGAGGGATGACCAAGTGCCTTATTGCAACTAGCGGGACCTCAGGCAGCTTCAGTGGCtcgcctctgtctctctctctctctctctctctctctctctctctctctaactacat

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307815 lncRNA upstream 36175 23473913 ~ 23474444 (+) True G260011
TU307813 lncRNA upstream 41562 23468826 ~ 23469057 (+) True G260009
TU307756 lncRNA upstream 148329 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 161682 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 175284 23332680 ~ 23335335 (+) False G259968
TU307893 lncRNA downstream 5613 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA downstream 32781 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 305077 23826892 ~ 23827631 (+) True G260222
TU308086 lncRNA downstream 339827 23861642 ~ 23862570 (+) True G260223
TU308080 lncRNA downstream 345836 23867651 ~ 23869556 (+) True G260217
XM_034312172.1 mRNA upstream 966 23507539 ~ 23509653 (+) True LOC113530383
XM_034311682.1 mRNA upstream 3641 23505191 ~ 23506978 (+) True LOC117599230
XM_026921419.2 mRNA upstream 16229 23488510 ~ 23494390 (+) True LOC113530973
XM_026920690.2 mRNA upstream 24095 23483725 ~ 23486524 (+) True LOC113530553
XM_026920691.2 mRNA upstream 29849 23477194 ~ 23480770 (+) True LOC113530554
XM_026920292.2 mRNA downstream 8679 23530494 ~ 23546073 (+) True otud4
XM_026920293.2 mRNA downstream 8679 23530494 ~ 23544856 (+) False otud4
XM_026920291.2 mRNA downstream 8680 23530495 ~ 23544856 (+) False otud4
XM_026920110.2 mRNA downstream 41730 23563545 ~ 23568673 (+) True anapc10
XM_026921416.2 mRNA downstream 50382 23572197 ~ 23583979 (+) True LOC113530971
TU307780 other upstream 121305 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 126966 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 126966 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 831069 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1198731 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 510412 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 746762 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1103122 24624937 ~ 24634545 (+) False ddx58

Expression Profile