Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026920304.2 |
| length | 964 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | ebp |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11260774 ~ 11264393 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016125 | sterol metabolic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0047750 | cholestenol delta-isomerase activity | molecular_function |
| id | description |
|---|---|
| K01824 | EBP; cholestenol Delta-isomerase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU299681 | lncRNA | upstream | 13912 | 11245898 ~ 11246862 (+) | True | G253151 |
| TU299682 | lncRNA | upstream | 15302 | 11244761 ~ 11245472 (+) | True | G253152 |
| TU299500 | lncRNA | upstream | 156247 | 11104139 ~ 11104527 (+) | True | G252996 |
| TU299459 | lncRNA | upstream | 221343 | 11038218 ~ 11039431 (+) | True | G252966 |
| TU299445 | lncRNA | upstream | 260954 | 10998081 ~ 10999820 (+) | True | G252955 |
| TU299753 | lncRNA | downstream | 106310 | 11370703 ~ 11372352 (+) | True | G253210 |
| TU299755 | lncRNA | downstream | 108602 | 11372995 ~ 11376620 (+) | True | G253212 |
| TU299761 | lncRNA | downstream | 128041 | 11392434 ~ 11414634 (+) | False | wu:fa11c10 |
| TU299791 | lncRNA | downstream | 197321 | 11461714 ~ 11462757 (+) | True | G253248 |
| TU299793 | lncRNA | downstream | 205658 | 11470051 ~ 11479369 (+) | False | zgc:103759 |
| XM_026920568.2 | mRNA | upstream | 23407 | 11231385 ~ 11237367 (+) | False | oard1 |
| XM_026920569.2 | mRNA | upstream | 23751 | 11231378 ~ 11237023 (+) | False | oard1 |
| XM_026921133.2 | mRNA | upstream | 32418 | 11225609 ~ 11228356 (+) | True | guca1b |
| XM_026921274.2 | mRNA | upstream | 37144 | 11123954 ~ 11223630 (+) | True | LOC113530897 |
| XM_026920483.2 | mRNA | downstream | 15436 | 11279829 ~ 11302003 (+) | True | pard6b |
| XM_026920980.2 | mRNA | downstream | 46576 | 11310969 ~ 11341526 (+) | True | arfgef2 |
| XM_026920981.2 | mRNA | downstream | 46576 | 11310969 ~ 11341526 (+) | False | arfgef2 |
| XM_026920982.2 | mRNA | downstream | 79960 | 11344353 ~ 11369724 (+) | True | bcl2l1 |
| XM_026920983.2 | mRNA | downstream | 81143 | 11345536 ~ 11369724 (+) | False | bcl2l1 |
| trnah-gug_14 | other | upstream | 856 | 11259847 ~ 11259918 (+) | True | trnah-gug_14 |
| TU299671 | other | upstream | 23412 | 11231429 ~ 11237362 (+) | True | oard1 |
| XR_003403205.1 | other | upstream | 264031 | 10996609 ~ 10996743 (+) | True | LOC113530991 |
| XR_004579720.1 | other | upstream | 348241 | 10872029 ~ 10912533 (+) | False | atp2b3b |
| TU299368 | other | upstream | 409429 | 10848851 ~ 10851345 (+) | False | b4galt3 |
| trnaf-gaa_28 | other | downstream | 3218 | 11267611 ~ 11267683 (+) | True | trnaf-gaa_28 |
| XR_003403199.2 | other | downstream | 128199 | 11392592 ~ 11415449 (+) | False | wu:fa11c10 |
| XR_003403198.2 | other | downstream | 135643 | 11400036 ~ 11415449 (+) | False | wu:fa11c10 |
| TU299947 | other | downstream | 627757 | 11892150 ~ 11900364 (+) | False | G253367 |
| XR_003403157.2 | other | downstream | 849229 | 12113622 ~ 12121372 (+) | True | trim101 |
