RNA id: XM_026920306.2


Basic Information

Item Value
RNA id XM_026920306.2
length 1714
RNA type mRNA
GC content 0.44
exon number 3
gene id fkbpl
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11274090 ~ 11277676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACTCACGTCGCGGAGGCGGAAGTGGGATTTAACAACATGACAGGCTAGGATGCTAGATGGTAGTTAGCTACACAGCTTTATTAGCTATCAGTGCGTAATTTGACTTGTAATTTAGACTAAACAAGCGTATCATCCTGCGTAGCTTAATGTCTTTAGAGGCACACATGCAGTGCTGAAACCGTGactgttaaatgtaaatgtttagtgaAGTGTCTATTGAATTAGCCtgcttcattaaaataaacGAAGAAAAACTTCCTATCAAATCCTGTCTACACTTATATTtaagttttcattcatttatttccctTGGTTATTAAAATTTCTCTTTAGGTCTCTTTAGAAATCATTTATGGCCACGGAAACTAACACAGAAGAACAAGTGAGGAGTGAAACCTCATGGATATCAGTGAGTCCTAGTGGGCTTTGGGAGGTACACAGAAGGTGGaagggggagagaaagagaggagacaACACTCCTCTATTAGGGTCCATATGCAAAATCAGAGTGTGTCCGAAGAACCACACAGAAGATAATCCCCAGCCTCTGAGCTCGAATGAGACTGTTAGTGCAGTTAGTGACAGTTGTGTGCAGGTTACAGAGTATCCTCGCTCCCAGGATTCAGTGCTGCAGGTTCCTCTGGACAGCTGGACGATGCTGCGTATGGGAGAGGGACAGTGTGACATTATAGAGGGCTGTCTGGAGGGAATGAGGGCTGGAGAGACCTGTGAGTTCACAGTAAGGCCCCATCAAAGACATCTGAAAATGGCACCCAGTGATATTCATGCCACCCAGTTCAAGGGGActggagaggagagacagatggaaacTGAGTGTTTTTCTCTGCAGCTCCACTCATTCACCCCAGGGAAGGAGTCCTGGCAGATGCTTCCTACAGAGAAGTGGACCTGGGTGCTGTCTCATAAGCAGCGGGGCAGCCAGCGCTTCGGCAAGGGAGACATTTGGGGAGCAATGCATTCTTACTGCTGTGCTGTTAAGCTGCTCATCACTTTAAAGGGACATACAAGAGGGAAAGATGGCATTCCAAATGTTGATGGAAGCAGGGCCTGTGACTTAGAAACACGAGCAgtaaatagagagacagaagcCAAAAGCACCCACATCCAGACTGAGGAGGAGTACAGGACTATGAAAGCAGAACTCCATTCGAATCTTTCCCTGTGCCAGCTCAGGCTTGGCCAGCCCGCAAAAGCCAAGGACAGCAGCAGCAAAGCCGCTGCACTGGATCCAGCGAACATTAAAGCCTGGTATCGCCTTGGCCAAGCCTGTCTGCAGTTGGAAGACTTTGCAGAAGCACGCCAAGCTTTTGGCAAAGTCCTAGAACTCCAGCCAGGTTCTGCCTCTGCCCAAAATGCCTTGAAACAAGTAAATGCAAAAGCAAAAGAGTTTGACAATAAGCTTGGGCAAAGGCTAAGCAAAATGTTTACCTAAGGATTTGCAGACAAACCAGTATCTGGATAAATGTATCAATATATTAGAAACAAATGTGAACATATTATCAGCCTTCAGTGTATACTTAAATGTAGCATATCAAAAATATACAACACTTTAATATCCCAAGAATCTTATGCAGTGATGTGAAACTGTTTTAAACAGGGGATATATTACAAGAAATATTGCTCTATGCATGGTGGTTGTATTATGGTTGTATGCTGAACAAATACCAATTAAACTATTTATAAACATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299705 lncRNA downstream 8941 11264909 ~ 11265149 (-) True G253174
TU299539 lncRNA downstream 182755 11089077 ~ 11091335 (-) False LOC113530615
XR_003403161.2 lncRNA downstream 182804 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA downstream 183407 11089077 ~ 11090683 (-) True LOC113530615
XR_003403192.2 lncRNA downstream 235122 11037822 ~ 11038968 (-) True LOC113530895
TU299971 lncRNA upstream 76383 11353502 ~ 11354217 (-) True G253383
TU299973 lncRNA upstream 82396 11359515 ~ 11361585 (-) True G253385
TU299972 lncRNA upstream 85853 11362972 ~ 11364414 (-) True G253384
XR_003403134.2 lncRNA upstream 178901 11456020 ~ 11462531 (-) False LOC113530309
XR_003403133.2 lncRNA upstream 178901 11456020 ~ 11462531 (-) False LOC113530309
XM_034311610.1 mRNA downstream 15403 11256064 ~ 11258687 (-) True ccdc115
XM_026920565.2 mRNA downstream 19484 11247652 ~ 11254606 (-) True si:dkey-109j17.5
XM_034311770.1 mRNA downstream 20547 11247652 ~ 11253543 (-) False si:dkey-109j17.5
XM_034311771.1 mRNA downstream 20548 11247652 ~ 11253542 (-) False si:dkey-109j17.5
XM_026920567.2 mRNA downstream 31786 11238252 ~ 11242304 (-) True apobec2b
XM_026921201.2 mRNA upstream 95123 11372242 ~ 11376560 (-) False LOC113530844
XM_026921202.2 mRNA upstream 95123 11372242 ~ 11376409 (-) True LOC113530844
XM_034311706.1 mRNA upstream 160930 11438049 ~ 11444255 (-) False emp3b
XM_026921110.2 mRNA upstream 160930 11438049 ~ 11443931 (-) False emp3b
XM_034311707.1 mRNA upstream 160930 11438049 ~ 11443930 (-) False emp3b
trnan-guu_24 other downstream 687 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 14976 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 258460 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 635372 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 804556 10460694 ~ 10469534 (-) False usp21
TU299993 other upstream 178902 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 178902 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 279768 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 615229 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 615808 11892927 ~ 11893002 (-) True LOC113530993

Expression Profile