RNA id: XM_026920323.2


Basic Information

Item Value
RNA id XM_026920323.2
length 2720
RNA type mRNA
GC content 0.51
exon number 3
gene id xkr7
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13509588 ~ 13571301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacacacacgcacacaccaacCTTCCCTCGCCTCCACTTCTCCCTTCTCCTCACCCCCTCCTTCTCTTCGCACaaacaaacatggccgccaaaTCGGACGGAGCCGCCGCATCCGCCGTAGCCTCGGCTTCCGCGTGCGCGCGCGATAAGGAGCCCGAGGCGCGTTGTGTCCTCGCGGGGCCGGAAGAGCTCCAGGACGGCTCCCGGCGGCACGCGCTGCTCGACTGCTGCTGGGTGCTCTGCGCGCTGCTCGTCTTCTTCTGCGATGGCGCCACGGACGTGTGGCTCTCGGCCGACTACTACGCGCGCCGCGACTACTGGTGGTTCGCTCTCACGCTGCTCTTCGCCGCGCTGCCCTCCGCCGTGGTGCAGGTGCTCAGCTTCCGCTGGTTCGTCTACGACTACGCGGCGGAGACGGAAGAGGacgcggcggcggcggcggcagcGGCAGCGGCGCGCTCGCGGAGCCGGACGCTCAGGTGCTGCCGAGCATGCATGTGGACCTTCCAGTCCCTCGTGCACATCCTGCAGCTGGGCCAGATGTGGAGgtacaTTCACACGCTCTACCTGGGTGTGCAGAACCACTGGTATCGCCACTGCTACTGGCGCCTGATGTTTGAGACGGCTGATGTGAACATGCTGAGGCTGCTGGAGGCTTTCCTGAAGAGTGCACCACAGCTTGTCCTGCAGCTCAGCATCATGATCCACAGCAAACACATCCTGCCACTGCAGgGTCTCTCCACCTCTGCCTCTTTGGTCTCCTTGGCCTGGATGATTGCCTCCTACCAGAAGGTCCTTCGTGACTCCAGAGATGACAAGCTACCCATGTCCTACAAGGCAGTGATTGTGCAAATGCTGTGGCACCTGTTCACCATTGGCGCACGTACCATCGCCTTTGCACTCTTCGCCTCTGTCTTCCAGCTCTACTTTGGCATTTTTGTTGTAGCTCACTGGTGCGCCATGACCTTCTGGATCATCCAAGGTGAGACAGACTTCTGCATGTCCAAATGGGAGGAGATCATCTACAACATGGTTGTGGGCATCATCTACATCTTCTGCTGGTTCAACGTCAAGGAGGGTCCAGCGCGATGCCGCCTGGCCACATACTACTGTGtgattttggtggagaatgcggCGCTCACGGCCACCTGGTATGCATACAGGGGCCCACACACCTCAGACTTCTATGCCcttatcattgtgtgtgtggtagtaTGCAGCTATGCCTTGGGAACCTTTTTTATGTTTGTCTACTACTGCCTGCTCCATCCTGATGGCCCAGTCCTGGGTTCACAGTGGAGCTGCATGGAGGAAGGAATTGGTGCAATAGGACTCGGAGGTGTGGGGGACCTGGGGACACCTCTGCCCCAACCAGATGTTATCACAAGTCCCCCGAGAACCTTGCAGAGGACTAAGGATGGGGAACGGGAACCAGGGGACAAGGAGAGTTGCCTGCCTGTTTTTCAGGTGAGGTCCATCAGTGTGGCTCCTGCACCTTCTCCCCGAACACCAAAAACTGAAGGTCCTGTTATCCGCATTGACCTGCCCAGGAAGAGCTACCCAGCCTGGGATGCACACTTCATCGACCGTCGATTGAGAAAAACCATCTTGGTGCTGGAGAATACATCGCCAGTGACGCCGCGGATCCAGTACCGCAGCCTTGGCAGCCCCAAAGAGGTGATGGAGTACGAGACTACTGTGTAGTTGCAATTCCTGACCTCCTGTCCGCAGGGACTTCGCCTGTGACTCTGCATCTCTGTGTAGAGAAGCAATGAGGAGTAAGGCAATGCTGGGAGATTCCCACAATACCATTGGTGCTCTaaggcatgtgtgtgcatgggacATGGGACACTGGCTTTGCCTGGAAATTATCATCTGTTCTGAAAACttgtatttcagaaaatacGAGTGGAACATGAGTGAGGTTAGAAGTTAAAGGTCAAAAAGCTCAGTGAGTAAAGAGTTGACTGAAAACGTGAATGACATTCAAGAATAATACCACAATGCCAGCCATAAGTACTGATCTGAAAAGAAGGGTGATACCTGTCCATagatgtttaatgatgatgtgcATGGACGTGATGATGATAAATGTAAGTAAGAGATTTCAGGTGAAACATGTTAAATGCTAGAAGAACTGACCGATCATCTCAGTCCAGGACTGCCCTGGGAACTGCACTGGTCTAAATCCATGATTGTTAGCAACTTGAAAACAGTACCAGTTGTGTATTATATTGCTTATGTGAATGGTGAGGTTAGCCAGGTGAATcatcattgatttatttattgatcgagtagatttatttttttgttactcTGTGGCGATGATAAAAATTTTTATGGTATATTAATGTATACATATAATCTTTTTTCttatatgtatacagtatattggaaTGGTATCACTGTGTAGGTATGAATGTCTTTTGGGTTGTCTGTATGTTCAGCTGGTCTTTGATCATACTGCATTGTTTATCTGtaaaggtaaaagaaaaaaatgggttACCCATGCCCTGATGATGATACATTATGACTAAAATGTAGTTGGAAAAATATTTAGTAAAATGGCTGTCAACAgccctggaaaaaaaaaggaaaactaaaGCAggttggttgtgttttttttcccccataggTTCTCTTGTTTGCGAGACACTGGTTTTGTTGCAAGAGTGTTTGCTGCTCTGTTGGGCAGCATTTGATTTGAAGAGCACAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301054 lncRNA upstream 1805 13507551 ~ 13507783 (+) True G254287
TU300872 lncRNA upstream 516376 12993002 ~ 12993212 (+) True G254123
TU300771 lncRNA upstream 539579 12968371 ~ 12970009 (+) False kif3b
TU300770 lncRNA upstream 539579 12968408 ~ 12970009 (+) False kif3b
TU300743 lncRNA upstream 575287 12933229 ~ 12934301 (+) True G254006
TU301177 lncRNA downstream 42037 13613338 ~ 13613537 (+) True G254403
TU301178 lncRNA downstream 42646 13613947 ~ 13614240 (+) True G254404
XR_004579672.1 lncRNA downstream 149983 13721284 ~ 13722885 (+) True LOC117599220
XR_003403196.2 lncRNA downstream 152064 13723365 ~ 13727382 (+) True LOC113530938
TU301262 lncRNA downstream 256383 13827684 ~ 13832691 (+) True G254472
XM_034311539.1 mRNA upstream 21077 13466509 ~ 13488511 (+) False sox18
XM_026920139.2 mRNA upstream 21077 13484741 ~ 13488511 (+) True sox18
XM_034311555.1 mRNA upstream 78707 13386897 ~ 13430881 (+) False rgs19
XM_026920625.2 mRNA downstream 3215 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA downstream 3232 13574533 ~ 13587741 (+) False ccm2l
XM_034311877.1 mRNA downstream 19164 13590465 ~ 13621861 (+) True cables2b
XM_034311876.1 mRNA downstream 19164 13590465 ~ 13621861 (+) False cables2b
XM_034312171.1 mRNA downstream 490407 14061708 ~ 14067419 (+) False snx21
XR_003403145.2 other upstream 658593 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1125014 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1366061 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1388216 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1609224 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 498927 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 498968 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 498968 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 1098503 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 1098503 14669804 ~ 14673952 (+) False G254991

Expression Profile