RNA id: XM_026920366.2


Basic Information

Item Value
RNA id XM_026920366.2
length 3893
RNA type mRNA
GC content 0.48
exon number 18
gene id agap2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20699123 ~ 20718020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAATATCTGATCACCACAGATCAGCTTAATCTATGTTTGTGTCTATGTGTCTACCCAACTTGGACCTCATGGAGCAAACTGGTGTATCACAGCATAAAACCACCTACCTCATCTCCCTAACCTTGGTGAAGGTGGAGACAACTGAAGATCATGGGATGGAAAAGGCCAGGCAAAGTGTGGAGGGGGCCACAAGTCAGGCCGGAGGAAAACAATTATCTCCAAATGCAGACTCAAGCTACAGGGATctgaaacaacagaaaaaagaggAGGTCATTGAGCCAGAAGCAAGGAAAGGTACCCAGCTCAAAACAGAACAGGAAATACTTCCAAGCCCCAGGGACCATAAAGCACTTTTTACAGATGGTGCACAACCCAGTGACAGGCAAAAATCAATAACCTCATCCACTGCAGAAAACGGTGGGGCAAGAGAAGCCACAGGAGCATCTCACACATCTATATCCAAGGATGCAGCTGAACCAACCCAACCCCCAGGCACAAGCGATGGTGTAGGACGTGTTAACAAGCGACCCGTTTCCCTTCTAAAGACACACAGTGGTGCCCTCAGTAGTCGTGAGTTAAGGGAGGCCAGAGACAGCATCCATGCTTCCTCTAAGAGCCTGGATCGTAAAGACAGCAGGACCAGAATCCAGTCCCCTGCCAGCCCTGCTCCCAGCACATTTAGAGCCTCCTGGGCTGTGTGTGAGGCCAAACCCAATCAGGAAGATCAGAAAGGAGGCACCAGGGTTAAAATGTCTACAGAAGCTGTGATAGCCATGCGGACCCAAAGCCCAAGAGCAGAGAGACTGAAGTCAGGGTCTACATCTCTTCCAGCTCCTGTCACTGTGGTTTCCAAGCCCCAGCGCAAAGGGAAGAGTCGTACCCTGGACAACAGTGACCTGAACTGCCTGTCTGAGGACCTTCTGAAAGGAAAAGGTGGTCAAATGACATCAGACTTCAGGACAGGTCAGTTGCAGGGGACCTCGACTCGTGACCGCAAAATGCTCAGATTTATTAGTGGCATTTTTACCAAGAGCACTCAAGTCCCATCAAGCGCTGGTATGGTACCCCAAGTTCCTAGCTCCTCACAGAAAGAATCCAGTGAAGATGAAGCTTCCTGTGCTAACAGTCAGGAATGGACCTTAAATCGTTCTATACCAGAGCTGAGACTGGGTGTGCTGGGTAGCATGCGGAGTGGAAAGTCTGCCCTGGTAAACAGGTTTATCACAGGAAGTTATCTTCCCCTTGAGTCACATGAAGGTGGGAGATATAAGAAAGAGGTGTTGGTTGATGGTCAGAGTAACTTGTTACTGATTCGAGAGGAATCCAGCCTTCCCACTGCACAGTTCAGCAACTGGGTAGATGCAGTTATCATGGTGTTTAGCCTGGAAAACGAGGCCAGCTTCCAAGATGTGTATAAGAACTTCAGTGAACTGGGAGCTCACCGCAACACTGCAGACATCCCGCTCATAGTAGTGGGCACACAAGATAAGATTAGCAGCACTAATGTTCGTGTTATTGAGGATAAGCGGGTACAACAGCTTTGTGCAGATGTGCGACGCTGTACCTATTATGAGACCTGTGCCACCTATGGACTGAACGTGGACCGAGTCTTCACTGAAGTGTGCCAGAAGATAGTAGCAGGTAAGAAGCAAGCCAGCCATCTAGCATCCTGCAAGTCCCTACCCAACTCCCCCAGCCACTCTGGAGCCTCCACGCCTGTGTCTGCTCCATTATTAGGACAGGCCAGTAATGGGGGTCAGAGTAGTGATTATTCCTCCTCTTTGCCCTCCACCCCTGTGATAAGTCACAGAGAAATACGGGGAGTGGCAGGAGGAGAGGGAGGCTCTCAGCGAAATGTACCACGCCGCCGGACCTCCTTGTTCACGAACCGTCGTGGGAGCGATAGTGAGAGGAAAACTACGGACAGCAGAGCTGATGCAGGAGGCAGCAAACCAGTTATTATCAGACAGggcacattatggAAACGCAGTGAACGCTCTCTGAACAAGGAGTGGAAGAAGAAGCTTGTCACACTCACCAACAACGGCATTCTCACGTACCATTCAAACATCAATGAATATAGGCAGAACACCCATGGTAAGGAAATGGAACTCCTGCGTGTAACTGTGAAAGTACCAGGAAAGCGTCTACACAGGGCAGCACCCCCAGCTGGCCCTGCTCCTGCCTCTACCCCTGCCCCTGGCGTCAATGGCCTTTCAAAAGACAAGCCAGCATCTGAAGGGGGAACCTCATCAAATCTTCTGACTGTTGATGAGGCAGGTGGCTCTGTAATGTCATCTCACGATGACCAAAAAATCAAACGCTGTCCTTCATCCGTGTCCAATAAGGCAGTAAGCATGGAATCAAACATTGAAGGGGTTATAAGCCCTTCTCTGGGAAAAGACCTCCCTCCATCGTCCCCCATGAGCGACAGGAAGAAGACCAAAAGGAAGAAAAGTATGAACGTCAAAGGAGATGCTGCAGCTAGCCAGGCTGATGAGGAGGAGAACGCAGACTTTATCATCATATCAAGCACAGGACAGAGCTGGCACTTTGACACCCAGAATCAGGAGGACAGGGATGCCTGGGTGCAAGCCATTGAGAGCCAAATCCTTGCTTCTCTGCAACTGTGTGAAAGTAGAAATAAGCCTCGGAGAAGCAGCCAGAGTGAAGCTGTGGCACTACAAGCCATTCGCAATGCCAAAGGAAACGATCTGTGTGTGGATTGTGATGCACCATATCCCACCTGGGCAAGTCTAAATTTGGGAGCACTGATTTGTATTGAGTGCTCAGGAATTCACAGGAATCTCGGGACACACTTGTCCCGAGTCCGTTCCTTGGACCTGGACGACTGGCCTAGTGAGCTCACCAAGGTGCTTATGGCAATAGGCAATCACATGGCCAACAGTACTTGGGAAAAATGTACACAAGGGCGCCAAAAGCCAACGCGTGAGGCGACAAGAGAGCAGAGGGAGTCTTGGATCCGGGCTAAATATGAGCAGAAGGTGTTTGTGGCACCCTTGCCAACTCAGGACGAGAGCCCAGGTGAGGTGACATCATCACAGCTCCTCAGTGCCGTCACCAGCAAAGATCTTCCCAGGCTCCTGCTGCTCTTGGCCCACAGCACCAAGGAGCAGCTCAATGTTCCACTGCAGTCTCAGAGCCCCTTACATGCAGCCTGCCAACTTGGAGATGTGGTCATGACTCAGCTCCTAGTCTGGtATGGTAGTGATGTGAAAGCAAAGAATCCTCAAGGCCAAACAGCTTTAATGCTGGCACAACAAGCTGGAAGCCAAGAGTGTGTGGATATTCTTCGCCAACATGGCTGCCCCAGCGAAACCTCACCCACTGCGCCCACTCCCATCCTCTCCCGCAAAAGTAGCATCACAAGTCTTGGACGTAACAATTCCAGGAGAAGGGTCTCATAACTTGGAAAGACTTCATGGACAGACAAAGATtctttctggggaaaaaaacaacagtttttatttcattttgttaaaaagctATGTACGTCTCTCTCTGTGGATGTTTTGCTCTGTCCTCATTCATATACGTACATTTAGGTTCCTCAGAGAAGgcaaaaaaatgttcttgtcaatgtatgaaataaaattacCAAGCCAGCTTGAAATCAAATACAGATACTGTTTCAACAAATCAAAAGCAATATAATACATGCTAATTATATATCTATTAAAGACAAATGTAGCCTAGAGAGCTTCTCCAAGCAATCTGAGCAGATGTATTCAACATTACTGTATGACTCATAAAACTGTTCCTCATAATAAGCAACATAAATGAGACCACTGTGTTTGTATGGGGAAAGAATAGTATTTGTCATTGTGCAACGTTTCTGAATACTAGAATTAATAAACTTAAATCTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305785 lncRNA downstream 88064 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 105962 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 175478 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 178920 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 182410 20511166 ~ 20516713 (-) True G258189
TU305953 lncRNA upstream 64038 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 171688 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 189167 20901278 ~ 20902757 (-) True G258427
TU305993 lncRNA upstream 241515 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 261286 20973397 ~ 20976261 (-) True camk2n1b
XM_026920372.2 mRNA downstream 931 20691806 ~ 20698192 (-) False LOC113530420
XM_026920370.2 mRNA downstream 931 20691806 ~ 20698192 (-) True LOC113530420
XM_026920374.2 mRNA downstream 1476 20691806 ~ 20697647 (-) False LOC113530420
XM_026920373.2 mRNA downstream 2186 20691806 ~ 20696937 (-) False LOC113530420
XM_026920755.2 mRNA downstream 40945 20613668 ~ 20658178 (-) True spryd3
XM_026920514.2 mRNA upstream 42551 20754662 ~ 20773067 (-) False hipk1a
XM_026920510.2 mRNA upstream 42551 20754662 ~ 20773067 (-) False hipk1a
XM_026920508.2 mRNA upstream 42551 20754662 ~ 20773067 (-) False hipk1a
XM_026920512.2 mRNA upstream 42551 20754662 ~ 20773067 (-) False hipk1a
XM_026920509.2 mRNA upstream 42551 20754662 ~ 20773067 (-) False hipk1a
TU305550 other downstream 427216 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 579174 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 589913 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 595212 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 1077563 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 118717 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 456875 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 642515 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1217064 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1733919 22446030 ~ 22449427 (-) True G259306

Expression Profile