RNA id: XM_026920373.2


Basic Information

Item Value
RNA id XM_026920373.2
length 3957
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC113530420
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20691806 ~ 20698192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGGCCATTTTGTCATAGGTGTACTATAACCCTGAGTGAGGCTAGTAGATCATCTTTACCAGATGGTAAAAGCTGGTAGAAAGGAAACAGCTTCTGATTTACAGCTACTAATGCTACATAGTAGacaagttcattcattcattcattcacatttagtaaacactttatcctggtcagggttgtggtcgATTTGGCGCCTATCCCGGAGCGCCGAGCGTACAGGGCATGGCACAGGGACACATTAAATGGGATGTGAATCCATaatagggcaccatgcacacctAAGTAGCAAGACTACCTATGGACAAGTTTTTGGGAGTTGGGATGAAATTGGAGAAGCAGAAGGAAAACCCACAGGgtgaacatgcacagaaattccACACATGCAGTGGTTGAGATCGAACCAGGGTCTCTGGAGGTGTGAGTTGAACTGAGGTCAACGCCGCGCTGGCAGGCATGCGGATCCGGCTGCAGAGGTCAGGCCATGCGGCCCTGCTTCTATCCGAGCTCAACCGCTGCCGCCTGTCACGGCTCCTCTGCGATGTGGTTCTGCAGGTTGGAGGTCGATCCTTCCCTGCACATCGTGCCGTCCTTGCATGTGCAAGCTCTCACTTCAGCAGCCTGTTATCTAGGGGCCCGTATGGCCAGAGTGGGACTCCTCCCACGTTTTCTTTGGACTTCATCTCTGCAACCAACTTTGAGAAAGTGTTGACTTTCATTTACACGGGCGAGATCCTCACTGATCTGATAGATGTCGGTGTGCTGTACGAGTTGGCAGAACGACTGGGTGTCAGGGAATTGGTACGGGCTTGCCATGCCACTTTCCCAGATATGAAGAGCTcagatggagatgtggaaacgGACATGACCCCTGCTACCACCATACATGCCTCCATGTGCTCTTCATCCGTGGCATCCTGCTCTTCTCTGTCATCTCCTGCTGCTCCCACTCCTGTAGCACCTTCTCCTCTCCCTCAAAGCAGAGGAAACAGGGTAAGCCGCTCTCATGTGCCCCCCCTCTCACTCTCCCACTCGCCTAAAGCGGAGGATGGCTTTCAGCTACATCTGAGCTATAACCAGCtggcaaaaaacaaacagagctcATTGGATAACCACCACTCTCAGGCTTCCGAGATCCTCCCAGCTCTCACTTTGCAGCTTAAAACTGaacaggaggaagagaaagtggATGGGAACCACAGCTCAGAGGAGCAAGCCATCATTAATGGTAACAAAccagcacttcctgaagtgtgttCCATTCCTGACTCATCAGCACAGGCTGGGGGGGAAACCTGCGcaccatcctcctcctctggTGACCCACTGGATAGCCTGCAGCTTAGAGTGGTCGAAGGAGGTGTTGGACTTGGGGTTGGGGCAGTCAAAGATGACATTTTGTTTGGAGAGGAAGATGATGCAGAAAAAAGGAGCCTCCATGATGACCCTCCAGAGGATGGAGAGCAGTGGAGAGCACTGGCAGGGGATGTAATTGAACTGAGTGACGATGAAGAAAATTACATTGAAGAAGACGAAGACGACGAAGACTTGATGTGCATAGAGAATGGCGGAAGTGGTACCTTGGCAAATGAAGGCCAGTTGGCACCATCATCACAGCCCTGTAAAACCTGTGGAGTGTTGCTGCAAGCAGATAACAGTGTCTTACGTTCTCATGCAGAGACGCACCTGTCTGAGATGGGCAGCTGCCGGGTGTGCGGCACTTCTTTCCCTGACCGTGCATCCAGCATTGCTCATGCCCTCACACACGTGGGCATCCTGTTGTTTTCCTGCGAGATATGTGAGTTGCAGTTCTGCACCGAGGCTGAACTGATCCGTCACAGGCGCCAGTCAGTGGCCCGATGCGTCCCCCAAATGCCAGAGCAATTTAACAATGCCACTCAGGGGCCTGGAGAGGAACTGCACTGTGCTGTATGCACTAAATCCATTCCTAAGGATTTAAAGGCTGTCAGGGAGCATGTACATGGTCATGTGTGTTTGCGGACATTGCGCTGTGGTGTGTGCCAGTCAACCCAACCCACGCGATGTGCTCTTCTGTGGCACACGCTAACACACCTCCTTGTAATCCACTCCTGCCCACAGTGTGCCTGTCCCTTCCTGGAGCGGCCTCTACTTGACACACACTTAGCCATGCATGCTGAACAAGGGGGAGTAGGCAAAGAGGATGAAGGCAGTCAGGAGAGCAGTACAGAAGGACAGGGTGAGTTTCAGTGCTTCTTGTGTCCTCAGACTTTCCCTTCAGACGCAGCCTTCCACTACCACCTGAGCACGCACCCTAGTGAGCCCCATACATGGCCTGCCAAGCGCAAGGCAGACCAGCCACTGgagttttcttcctcttcttcctccccACTGGAGCCAGGGGTCATGGGAAAACTTGGTGGCCTAGGCTTTAATATGGGCACATTTATACCAGACAAAATGATTCAAGCTGGTATGCCATTTCCTGCTGGACTTTTACAGAATGGCAGCTCTTCTGGTTGCCCTCAAACGGGTGCAGTTCTGAAACAGAAGTGGTACCGCTGCAGGTATTGCGGCAAGCGTTTCGCACACTCCGGCGAGTTCACCTACCACCTTCGCatccacacaggagagaagccatacCAGTGCAAGGTGTGCCTGCGCTTTTTCCGTGGCCGCTCCACCATGATCTGCCACTTGAAGACACATGCTGGTGCTTTGATGTACCGCTGCACTGTGTGCGGCCTGTACTTCTCAACGCTGAAGATGGTCTCGTCACACATGGAACTCCACAAGGACCACCTACCTCCTGACTTCAATATAGAGGAGACATTCATGTACAACGACCACTCCAAAGAGCCGGTCCCTAATCTGGACACCTGAAATTTATACTCATGTGCCTCAATACTTATCTTGCTCATTATCTGTGACCATTGTGGAGGACCAAGTAGAAGTAGGAtgctattaaatgttttatgtcatAGACTGGAGATTGAAGTAGGTACTGTTATTGCATTGCCACTTGGTGGCAGCATTTATGTATTTAGGGCGCACTGACTGTTCATGTGGATGTGAGGTTTGGTTATTAGTTTAGGATTACCTCTTGATGTTCTTCCTTCTACTCATTCTGTAATTAATATAAGCTAAATGTATATATTCTAGAGTGTTACAACAGCATACTGTATCACCAGTAAATATGGTAGTGTAAATGGGCATTGTAGAAGAAATGGAAGATTCAGTAAGCGGACAAATGAGGCAAGATACAAGACTGTGCTCTGCTTTGTTGCCCTCATACAGAGGGTAATTTTTTAGAGTTGTGTTTTActtggttatttatttttacactttattttattcattattcattcattattcactcCTTTTTTATGTTGTGTTTGAATTCAGCACAAAGTGCTCATTTATTTGTTATGTATTAAGATGGTATCAAGCAAGGGTGAAAATAAAGCAGTCATATCCATCAAATCATAGCGTAAACGtagagtaaggaataaatcatgtGTAGTCAGTATAGTTCTGTCATCTTTTTATAAGATTCCCCAGTGTTCAcctttattatatcatattttacTGATAATTGGATTGAAATAGTTTGTGTATCCTTAAAGCAGCAGGAATAAGTAGCATTTTTAATGTTACACACTGGTGACTGGTTTAGTCAGCAATTCCAGTGTCAGGACCAGCAGCAAGTTCATCAGTAATATCTCTTTGAGAAGTGTAAAAATGGTACCTATTGCCTCTTTAAGTGGGCTAATTCCacaatgtgtaatatttttttaatgtgaaagcAGTACCTTATCATACAATTTAAGATctataactatttatttatttatagctttttatgttgatatattatattttgtaaggAGTGTTTTCATTATAAATAGGAGCATATTACTTTGTTCTCAACTGTATTTGTTTCGTATGTGTGATTAAAATTGATCTGGCAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305785 lncRNA downstream 80747 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 98645 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 168161 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 171603 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 175093 20511166 ~ 20516713 (-) True G258189
TU305953 lncRNA upstream 79212 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 186862 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 204341 20901278 ~ 20902757 (-) True G258427
TU305993 lncRNA upstream 256689 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 276460 20973397 ~ 20976261 (-) True camk2n1b
XM_026920755.2 mRNA downstream 33628 20613668 ~ 20658178 (-) True spryd3
XM_026920756.2 mRNA downstream 33628 20616635 ~ 20658178 (-) False spryd3
XM_026920757.2 mRNA downstream 36229 20616635 ~ 20655577 (-) False spryd3
XM_026920972.2 mRNA downstream 105382 20580607 ~ 20586424 (-) True zgc:174906
XM_026920876.2 mRNA downstream 113872 20567789 ~ 20577934 (-) True csad
XM_026920368.2 mRNA upstream 2186 20699123 ~ 20718020 (-) False agap2
XM_026920369.2 mRNA upstream 2186 20699123 ~ 20718019 (-) False agap2
XM_026920367.2 mRNA upstream 2186 20699123 ~ 20712111 (-) False agap2
XM_026920366.2 mRNA upstream 2186 20699123 ~ 20712111 (-) False agap2
XM_026920364.2 mRNA upstream 2186 20699123 ~ 20712111 (-) False agap2
TU305550 other downstream 419899 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 571857 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 582596 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 587895 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 1070246 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 133891 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 472049 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 657689 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1232238 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1749093 22446030 ~ 22449427 (-) True G259306

Expression Profile