RNA id: XM_034311643.1


Basic Information

Item Value
RNA id XM_034311643.1
length 4907
RNA type mRNA
GC content 0.47
exon number 9
gene id ttc34
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10403177 ~ 10411529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGTGTGGATATTTGTAAGTAGCTAAATTCAGAGCTAAAGTCACTAGACTTACAATAAAAACGTGCAGTTTAGTAAGCgtaaacacaaactagcatttaAGTATATTAAGTGGCTTCCAGCAATCTTAAGACCGTGTTATGCTTGTTCTAGTCACCAGGACAGACTGGGCAGCTGACTAAAGTTGCCCCATTTTCTAACTGAATGGAAGCTCCtgtggacagGCCCTGGTGATGGACTGGTGTACCATCCAGTGTTTATTCCTGCCTCATcaccagtgttcctgggataggtttccagttactgaagatgaatcagtGATCCTCCAGGTCTTTATCAGTGCTCACTCTCTGATCACAGCACTATGGCACTCATGTTGGCTTGATATTCTTGGTTGGTGGACTATTCTCAACCCAGCAGTGACAGATGTGTTAAAACCTCAGCAACACTGCGCCACCCGATAAACTCATAACTACACTTACTAACATTCCATTACCACATTACTGTCAACTGGGCTACATTCATTAAATGagaaAATGTCATGTGAATATTAAAACAGAGGGCATTACAGAAGAAAGATGGATGCCCTCCATCTGGGTTTGGGAGCAGTGGAGCTGTgcagacaggcagacaaaaTCTACACAGCTGGAGATGTTAAGAGAGCTGCAGCTCTGTATGCACAAGCATTTGGGTGCAATGCAGGATCCACTATGGCCCATATGCGCAGCTTGGACAGGGCCTGTGTAGAACAGATTATTTCAAGTCTGGAAGCTTGGCTTGATGGACATGAAATGACACAGAAGCCTATGGAGGGAATTAGCAAAGGACTGGGCGCAGTATTCCTGTCAACCTTGTGTCCCAATAATGTTTCTGCCTCAGTTTTTAAAATGGAGTCAGTCCTGCTAGGGGCTGCCCATGGCTCTGATGAGATCTTCGCCCGATGTTCATCTCTTCTGGAGGAAAAAAGGATGCCTCGTCCAGAGGGTCCTACACGGGTAATTGTGGAGTTAACTAGAGCTCTTGCCTGCTTGATTTCAGATCCCCATAACCCCAAAGGCCCTCTGCTGTATCTGCAGGCTTTCCTTGCAAATAGATCAGAGACAGTGAGACTGGTCAAAGGTCGGCATGCGGAGCATTTGCCTCGAATAGTCAAAGCTTTCTTTGAGCAAATGTCCCCAAAATTCCCCATTCTTCATGCTGAGTGCAAATTGGAAGACAGTCtcaattatgaaaaaaagactGAAGATCTCCCCCTCTCTGAATCAGTTGACTTTTTAGTTGCTATTTCACCTGAGAACACACTAGTGAGAGAACTTCAGGGAGctgtgttgttttccttgggCATATTTGATGAAAGTGCTGAGGCTTTGTCCCTGGCTCTGCAACTGGCAGAAATCCAGACAGATACAAAATCAAACCTGGATCTGGCTGTAATGGGAGCGACACCAGAGAGGAGAGCTAGTTTACTCGTGGCCAGAGCAGCTGCCTGTTTTTCAGCAAGTGGACGAGTGAGTGAAGCTTGCCGAGACCTTGCTGAAGGTTTTGCTGTCCACCCTGCGACGGCCAGACACCAGTTCCAGACGATGTTCTCTGAAAATGGCATTGCAGCAGTGGTGCGTTTTGAATTGCGGCATCAGGCTGAGAGAGGCCTGTCTAACTTTAAGGAGACAGTTCTCCAGAGATCTGACCTGCGTTCCTGCGCAGGGGTGGAGCTACTAGACCCTGTCATTGCCCAGCTTCGAGCTCTGTGCCATCTGGAGCCTGACGGAGGCGCTCGGGAGCTGCGGGTCCGACTTGCAGACTGTCTGCTCTTGCATGGAGAGTTCAAAGAAGCACTGTCCATCAGCAGCCAGCTTGCTGCAGCCACCCCTTTGAACTACCAGAACACAATACAGGTACTGCGTGGCTTTTCCCGGCTCCTCTCTGAGGACCACCAAGGAGCTCTGGAGGATTTCCAGGCTGTGATTGAGCATAGTGCTCCTCATCCTCCGAGTTGTGTGCGTGCTCTGTGCGGGAGGGGCCTGTTGCGCATGATGGCTGGCTCACATTACCTCACTGCACTGGACTACATAACAGCGAGTCGACTCCAGCATCAGGACACGGCACTGACCATCAGGTGCCTGGTGCCGTGGAACTACCGTGGCCTGCTGTGCACTGTGTTGCTTGAGCAAGGAAGGGAAATGCTGGAAGAGTTTGCAGGGCAGAGAAATATTTCAGGTGCTAATGCAGTCAAGGAGCATCAAATCAACAACCAGCTGCCAGCTGCCAAACAGATGAAAGACCATCAGTCCATGATGACAGCAGAGGGCTACACTATCAACAAAGAAGGAATGGCAGTAGGTGTACATGCGCTTGCCGTTCTCTTGATGGAGTTGCAGCAGGATGAAGACTCGCCCCAGATCCTTGCGGCAGATGCCCTGTACCAGCTGAACCGTGTTGAGGAGGCATATCGTATTCTCCTCTGCATGGAGCGCACATCTTCCCGCTCACCTGTCCTTGCCCGACTCGCTCTGCTCCAGCTGCACCGGGGCTTCCTGTATGATGCCAACCAGTTACTGAAGAAGCTTATCCATTGTGGGGACACTAGCTGCTTAAGCTCTCTGCTCTCTGTGGCAGCTCTAAAGGACAGAGCACTCCTAGAGAAACACTGTCACAATGCGTCAAAACGCATTCTGCATAGCCAGCAAGAGGAAAGTGCCATCAGGGAGGCTGTGGCCTATCTCTCTATTGCCATTATGGCTTCAGGTGGTGAAGCAACGGACTCCTTATTGGAGAGAGCTAGATGTTACATTTTACTGGGCCAAAGGAAGACTGCCATTTTTGACTTCACTGCTATCCTTAAGGAGCACAGAAATCATGTGCAAGCTCTGTGTGGGAGAGGGTTCACTTATCTAATGTTGAACCAGCAGAAGGAAGCCACACAAGATATCCTGGCAGCTCTTCAGGTTGATGCAGAAGAGGTAACTCTGAGTATTCAGTCCTTAAAAGACAAGGCACGGAAGCTAATCTGCGAATGGCTACAACAGCACTGTCGTGCCAGACTTTCCACCATTCTATCTACAAACTCAATACCCTGCCAGCAGGATTGTCTTAAAGAAGCCTTTCTGATTAGTGGAGTGCTGATGAAAACTGACTACAGAGATCCAAGGTGGCACCTCCTCTACATAGATAGCCTGCTTGCCCGAGGGGACTTGAAGGCAGCAGGTACGCACCTCCTGCAGGTCTTTGGTCAGGAGCCTCGTGACGCAGCAGCCCAGGCCAGGTGGGGAGTGGTGGAGAGCTGGAAAAAGAACTACAGATCAGCAGTGAAGTGTTTGAGTGTGGTGTCTGAGAAAGATCCCTCAGTGCTAGACTTCCTCCTGACTCTCATTCAGCCCCAGCAAAAGACACGCCTGTCACaaGCAGCGTCGCAGGAGGCGAGCAGAGTCTCAGAGAGTGGCCAGTGGGAGCGTGCAGTGGCTCTGCTGACTGTGGCTGTGCAAGCGCTAGATGGTACAAAGCTCCAGCACCTGCGTCAGCGGGCAGCATGCCTAGCACAGCTGGGTCTCAATGAAAAGGCAGTGTCAGATCTGGATAGGGTCATCCTTTCCCACAGCCAGGACAGCAGTGAGGAGGCCAAAGTTAAGGCGGAGGATCTGTGCAGACGGGGCCGGAGTCTCCTGTCATGCTCCCGGGATGAGGTGGCTCTAAATGACTTTTGTCAGGCTTTGGAGCTACACACAGAGCAGGCACTACTGTGTGTGGAGGCTGGACCAGGAAGGCATCGCCTTGCTGAGCTCTTTCTACGCTTTGCACTGCAGAATTATGGAGAGCAGCAGTTGGACAAGGCCTGGCGCCTCACAGAGAGTGGCCTGAGGGTAGACAGCAGCCATGCTGAGCTGCGCCGTCTCAAAGCCAGAATTAAACGAGAAGTCTCTGGAACATGTATCgtacactaaaaaaaatctaaatacatTGGGTTTATGATTAGGTAACAGAAATGTTCAGGTACAAGTTATATGGGTTTCTAagtcacaaacatttttctattcttttttccttttgatcacttgtttttatgctgttttgtgtgaatAAATTGTTAATCATACATGAATGTTAGCACATAATAACAGAGCTCTAATCTATCTTGTGCTCATTAATGTTTACATGAAAAAGGGATTCCagtgtaatgtgttaatgtaattGTAGCTTTCTATTCAGAAATATGTTGAACCAAAATCTGTTTCATATTGTTCTTTACTTTTAGCTCATGtcactatatataaaatcatcCTTTAGGTTCAGTCAGTTTTGGGTTAAATGATTTGACTTGAAAATTATTTGTGGGGTTTCAAAAATTGGAAACAGAAATTTTTATGGGACACCTGAACAACGGATATGAATGTaacagaatgaaaataaaaatggcttcTGGAAATATGTTGGAGTTGGTTTCCAATGGAGCACAGAGCtggattaattaattagcaATTATTGTTTAGGTATGTTGGTGGCTGTAGGTTTAATGCTCATTCTCTCTATGCGTGCTCTTTCATTTATTGTTCAGGGCTCACATATTTCTTGAAATTTTTTCACTCGCAAAGTTGCGGAAGCCTGTTTAATCTAGATAAACTGGATTGGTGCAGTTTATACTGTGACAGTAGATAGAAATCTTGTACTTATCACACCCTGTTCTGCACCACACTAGCTTAAAACCTCTAGCATGACTCCACTGGACCTGTTATCCCTCAGGGTAAacggaagacatgcatcaagacttTCGGTCCTGtcacccaggtggtggaatgaactttccctctctgtctgaaCAGATGAGTCACTGGCTGAGTCAGGAAGACTGAAGACCTACTGCCTCTTCACCAAGCCCTTAAATTAActcttatttaataataaaaaaatcccttG

Function

GO: NA

KEGG:

id description
K24947 TTC34; tetratricopeptide repeat protein 34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 6437 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 114493 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 243805 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 298886 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 367476 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 370626 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 453851 10865360 ~ 10865700 (-) True G252920
XM_026921175.2 mRNA downstream 30481 10342798 ~ 10372696 (-) False megf6a
XM_026921174.2 mRNA downstream 30481 10342798 ~ 10372696 (-) True megf6a
XM_034311841.1 mRNA downstream 250455 10140734 ~ 10152722 (-) True emc1
XM_034311776.1 mRNA downstream 263886 10092732 ~ 10139291 (-) True ubr4
XM_026921430.2 mRNA downstream 312027 10065107 ~ 10091150 (-) False iffo2a
XM_026920288.2 mRNA upstream 1217 10412726 ~ 10420802 (-) True si:ch211-112c15.8
XM_026921324.2 mRNA upstream 27335 10438844 ~ 10458808 (-) False ccdc30
XM_026921322.2 mRNA upstream 27335 10438844 ~ 10458808 (-) False ccdc30
XM_034311758.1 mRNA upstream 27335 10438844 ~ 10458808 (-) False ccdc30
XM_026921321.2 mRNA upstream 27335 10438844 ~ 10458808 (-) True ccdc30
TU298725 other downstream 373184 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1824577 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2893430 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4095414 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 5255045 5148053 ~ 5148132 (-) True LOC113545697
XR_003403171.2 other upstream 49185 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 225014 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 602455 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 847534 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 861821 11273330 ~ 11273403 (-) True trnan-guu_24

Expression Profile