RNA id: XM_026920398.2


Basic Information

Item Value
RNA id XM_026920398.2
length 2430
RNA type mRNA
GC content 0.47
exon number 10
gene id pou6f1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16872863 ~ 16914072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgatcACACTCAACAAGGTGTTTCGGCCTGCAGACCTGCCACTCAccagctgttttttgtttttctcaccattctgtataaactctagagactgttgtgtgtgaaaatcccaggagatcagcagtatctgaaatactcaaagcagcccatCTGGCAACAACAACCTTGCCATGGTGATTGTCATGTCCAGTCATGAGACCATTCGAGTTCTAGAGGTTGAAGTGGACGCAGCTGTGCCCTCCCCAGGAGCTCATGTGAAAACTGAGGCAGGCGCAGAAGAGGGGAGAGGAAAAGCTTTAGAGCCAGCAGAGGGGGCCACTCAGGATAGACAAACAGCATCCAGTACCATCTCCACAGTTTCTAATGAGGCTGCAGCCCCTTCGGTTCAGAATGTTGCAATTCCTATAAGTCTCTCTTTGCCTCACCCTCAGACCAGCATGCCTATCACTATCCAGGCCTGTCCACAGGTTCTGACCCAGGATGGCCTTGCTACTCTGATGACTGGCATGATTGCCCAGCAAAACACTCTGAGCCAGCCTCTGCTGATTCCACTAAGTATGGCAGGCTCTGTGGGTGGACAAAATGGCCTGGCACTACTGACCCTTCCAGCAACCACCCTAGCCACTCTACCAGGTTTAGGTGCTGGTGGCCCGACAGGAGGGCTCATTAAACTACCTTTTGCTGGCCTGCAGGCTGCTACTGTTCTGAGCTCAGTCCAGCCTCAGCTTCAGGCACCTGCACAGACACTCCTGCAGCCCCAGGCAACTGCACTACAGTCAGTGCAGCAGTCTCAGGCTGCTCCAGCCAGCACTGCTACTGTAGCTTCAGTTATGCACAAGGTCACTGAGCCTAGTGCATCAGTTGCAACACTTCAGACCACAGGCCTCACCATCAACCCTGCTATTATCAGTGCTGCATCTTTGGGTGCTCAGCCACAGTTCATCAGTTCTCTGACTGCAACTCCCATCATCACTAACACCAATGTGGCAGGATTAACCAGCCAGATCATCACAAATGCACAGGGTCAGATGATAGGCACGTTGCCTGTGCTGGTGAACCCTGCATCTCTGACAGGAGTGTCGTCAACACATTCACCACCATCTCAGGGTCTTCAGGTGCCGACTGTGGCTCCTCAGCTGCTGCTGAACTCCCAGGGCCAAATCATTGCCACCATTGGGAGCAACCCTGGTGCTGCTGCTTTCACTACATCCACCAGCTCCACAGCCGTGACTAAAACTACTCTGTCACACACCAAGATCAACACACAGGCTCCCATTGTAACAGTAAACCAGTCTCCAGTCATGATTGCCCCACAGCCCTCCACAGGGAAATCAACCTCCTCATCGATTCCTGTTGCCTGTGCAGAAATGCCCACAGTCAGCCAACTTGTCAACAAGCCACAGTCTGGGGTGACTGAAGAAGAAGGCATTAATCTGGAGGAGATCCGTGAATTTGCCAAAAACTTTAAGATTCGACGGCTTTCATTGGGGCTGACGCAAACACAAGTGGGTCAAGCTCTTACAGCTACTGAGGGACCAGCTTACAGCCAGTCTGCAATCTGCAGGTTTGAGAAGCTTGATATAACCCCTAAGAGTGCCCAAAAGCTAAAACCGGTTCTAGAGCGTTGGCTTGCTGAAGCGGAGCTCTGGAACCAGAAGGGCCAGCAAAATCTAATGGAATTTGTGGGAGGTGAGCCGTCCAAGAAACGCAAACGCCGCACCAGTTTCACACCACAAGCCATCGAGGTCCTGAACAGCTATTTTGAGAAAAATGCACTTCCAACTGGGCAGGAGATCACAGAAATCGCCAAGGAACTGAATTATGACAGGGAGGTTGTTCGAGTTTGGTTTTGTAACCGCAGACAGACACTGAAGAATACCAGCAAGATCAATGTGTTCCAAGTGCAGTAGAGTGTACAATACAAGCCTGGAAAGACAATGAGATATATGCATGGATATGAATTGTTCTTTTGTACCGTGACATGTTAAAGTTTGTTAAAGTTTGTGACTTGAATGTTTTGTGAGGAGCCTCTTGGTGGGTTTTCACATTAAAAGCATTGGTATTGCACAAATGGTCAGTGTGGCAAAAATCATGATCGGTTGTGtcataatgtttttgttaaatctgCATGTGAACTTACTGTTGAAACAACAACACAGTAAATTAAGAACTAATAAATTATACAGATTGTCAGTTAACATTAAATAGTAGTAGTGGCAAAATCTCCTAAAAAATACTCTATTTGCTTTTTCAGTGTGTGAGCCTATTTGATGTTACTTCTTACACATTTGATTTCTTGTGCCATAGAATTTGCAGCTAAGATTCTAGTGGATTATGTATGCCCAGGAGTCTATCTGACATCTAGAAAAATTTAACTTCCAGAAACATTTAAGTTTGTTGGGGCTGTAACATTAAATGCTTTGTTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303148 lncRNA upstream 5103 16876802 ~ 16877036 (+) True G256119
TU303142 lncRNA upstream 30959 16847154 ~ 16851180 (+) True G256114
TU303122 lncRNA upstream 119593 16756532 ~ 16762546 (+) True G256097
TU303097 lncRNA upstream 152973 16661652 ~ 16729166 (+) True G256077
TU303285 lncRNA downstream 8839 16922911 ~ 16923403 (+) True G256239
XR_003403182.2 lncRNA downstream 134005 17048077 ~ 17050931 (+) True LOC113530783
TU303360 lncRNA downstream 134832 17048904 ~ 17049092 (+) False LOC113530783
TU303367 lncRNA downstream 140794 17054866 ~ 17055091 (+) True G256319
TU303370 lncRNA downstream 144120 17058192 ~ 17058497 (+) True G256322
XM_026920162.2 mRNA upstream 35154 16830566 ~ 16846985 (+) True bin2a
XM_026920163.2 mRNA upstream 35154 16830566 ~ 16846985 (+) False bin2a
XM_026920160.2 mRNA upstream 58292 16795302 ~ 16823847 (+) True racgap1
XM_026920161.2 mRNA upstream 59344 16795300 ~ 16822795 (+) False racgap1
XM_026920785.2 mRNA upstream 261696 16589514 ~ 16620443 (+) False plpbp
XM_026920841.2 mRNA downstream 22490 16936562 ~ 16960566 (+) True tfcp2
XM_026920744.2 mRNA downstream 90993 17005065 ~ 17034276 (+) True csrnp2
XM_026920459.2 mRNA downstream 157065 17071137 ~ 17124951 (+) True itga5
XM_026920984.2 mRNA downstream 258120 17172192 ~ 17175513 (+) True slc48a1a
XM_026920301.2 mRNA downstream 261635 17175707 ~ 17188377 (+) True LOC113530386
TU303060 other upstream 373759 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 485927 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 487139 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 652733 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1714471 15117112 ~ 15167668 (+) False rps21
XR_004579712.1 other downstream 157064 17071136 ~ 17120941 (+) False itga5
TU304341 other downstream 1965496 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 2118845 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2564230 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3476737 20390809 ~ 20398714 (+) True G258096

Expression Profile