RNA id: XM_026920421.2


Basic Information

Item Value
RNA id XM_026920421.2
length 5145
RNA type mRNA
GC content 0.45
exon number 7
gene id snphb
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12485170 ~ 12505963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACGCGTCTGCTTTCGTCTCAGCTGTGGTCGTTTTTCCTCGCACGGATTGCAAACAAACCTCACGCACAGGCGTCGCTTCCCGCCAGCCTTCCCTGTGCGCGCTGTCGGTGCAGTCCGCGCCCGAGCAGCGCGGGGGAAACGCCACGACAGCTCTTCAATGAAACGAGGAAATCCTGCACCAAAAGCGGGAGGCGGTAAACAGgctGGTTTGAGCTAAGCTGTTCGAGCTGTGCTAAGTGGAGGAGAAACAGAGGGAGGATAGGAGCGAGACACTGAGCTGCAGAGAGTGTGCTAGCTTGCCTCCATGTCTTCACCTGTCAATAAGAGATCTACTTCTGGGTCCCGCAGATTCAATCCTCTGAAGGCCCTGCAGCCCAAATGGCGCTTGCAGCAAATACTGTCCTCTCCTTCTTCACCCCCTCCTTTTGACTATTGCAGGTTTATAGAACTAGACTACACCCCCATGGAGGCAGGCATTATGGTCTCTATGAGGCAGAGCCGAGGATTTTTGACACCCAAGTCTCCGGAGCGCCACTGTCGGCGGAGTCCTGCGCCTATCAGTAACCGTGATCCCTATGGCAATGCCtctctcagcagcagcagcaactcAGGATCATGCAAGGGGAGTGACTGCAGCCCCACCCCCAGGCGCCATATGAAATACACCTCCTGCACGGATAACCATGGTATTAAGCCACCTCCTCCTGAGCAGTACCTGACCCCTCTGCAGCAGAAAGAGGTGTGCATCAGACATCTGAGGGCACGGCTCAAAGAGACTGTTGAAAGACTCCAGGACAGagacacagagatagatGAGTTGCGGACTCAGGTGTCCCGGATGCAGGAGGACTGGATTGAGGAGGAGTGCCATCGTGTTGAGGCCCAACTGGCCCTGAAGGAGGCACGCCGGGAGATCCAGCAGCTGAAGCAGGTCATTGATGTTGTACGCTCCAGCCTGGGTGAGGCAGACTCGGGTGTGCAGAAGTGTTTCCAAGACATCAATGTCCAGAACCACAAGTTGGAGACCCTGCTGCAGAGCATGGAGCTGGCACAAGCCGGAGTGGCAAAAGTTGCAGAGGCCCCAGCTGGGGGTGGGGCAGTGGGGGCAGGGCCGTGGGTTGGTGAGGGGTCAGTGGGCTCTTGTGAAGGCTCGCCGGCCCGTTCACTAACCCGCAGCTCTACCTACACTAAACTGAGCGAGCTGGCACCACCTGAACGCAATGAAAGTGGCAGTGGCTCAGATGTGGCGTGCTGCCTGTCAGCCGAGGGTACTCAGGATAGTGGTTTTGTGTGCTGTGGGGAGATGGATGGGGGTGGAGCCACACGGGCTGAGCTGCTGCTGGAAGCTGCTTGCCTATCAGAGGAAACAGCATCGCTGCTGAGCGCTTGCTCACGCCTGCCACACTCAGCTACCTACGAGGCACTGAGCTGTGGAGAGACACGGATGTTGCCACTGCGCTGCAGCCTGGGTAGAACTTCTGGAGGAGAGGCAGCCACGAGCATCAGCCACCCCTGCCTGTCGCATCACCACCTGTACCTGCACCACCTACGAGAACAGGCAATTCAGACAGAATGTGACTCTGGACCCGCCTCAGCCCCAGTCCATGGAGCTGCTTTTGGCTCTGACTTGGACACTATTGCTGAGGTTCGCACTTTCCGCTCTCAGGCCTGCAGCCCCACCTCCACCTGGCTGTCAGATGAGGGTGATGATCTAGACTCGGTCACCACTGAGTCTGTCATCACGGCCACAGCTGGTGGGAAAGCCGTTTTCACAGCTGTCTCTACAGAGTCAGCTCTGGCACTAGGTACCATGCCGTTTACTGCAGTGGAACCATTTAATAAATCCTCTGCTGCCAACGAGGCTGCTGTGACAATGGCTGTTGTTGATGATTCTTTTGCTGTGCTGCCCACTGCAAAAGCCATGCCAGAGACTGATCCTGCACTAAATCCTTCTAGTCAAGATCTACCCCCAAGCCCTGATTCTGCCTCCTGCCCTGTGCCAGTGATGCCATTGGTGGAGGAGAATGGAGAGCCCACCCCACAAACCACCCAGCCACAGTGTGTAGCTTCACAGACCAACACCAATGGGGTCACTGTTGTAGAGGTGGATGAGGATAATGAAGAAGACCAAGACGAAGGAGCAGCCAGCGCAGAGGGCTCTGGCTGTGGTGTGCCTGTAAAGAGCTACTGGAGCCGCCATTTTTTAGTGGATCTCTTGGCTGTGGCAGTGCCAGTGGTACCCACAGTGGCATGGCTGTGTCGGGGCCCACGGCGCGGAGGCCAGCCCATGTACAACATTGGGGCATTGCTGCGCGGATGCTGTACCGTAGCCCTGCACTCCCTGCGACGAGGGGGAGGTTTGCGGCATTACCCAGCAGGGGGAGGGGGGCCAGGAGGCATAAATATATGAGATCAAACCTGGAGCACCAGAGAGGATCCTCGAGCTGCTCACAGTGCTGTTTGCAGATCAGACTGGCAGAGACTGTGAGGTGTTAATGAACAGTTGACACCAGGTCAAGAGGCAAGATTAACACTGCACCTTGGTTATTAGTTAAATCCTAAGCATCACAACTCTAGTCCTGATATAGTATGTTGTCCTGATATAGGACGGAAGAAAGTGGGAGAAGTGTTTTATCAATAAATCTTTATTGAAAACATGTCAGTCCTTTGTGGTTTTATAAAATGGTACCCTTTACTTTCAAAACCTCATCTGTGACCCTGTTATCGACAATTAGTTGGCAGGACAAGAAGCTTCTGATGGTCATCTGACAAACATGAACAATGCTGTTGGTATTTTCAGGAGTATAAACAGAGTGAGGAAAAGAACACAATGTCTAAttctctgtcttcctgtctcCTGATCCCATGATGTACTCTTCTGTTCAAATAAAAtgggggtaaaaaaaataaataaaataacaaaacctACAAGTGAGTGTTAATACatgtgagtttgtgtttgtgttgtgttattgtgcAGTGTAGCTGAAGCACCTGAACAACTGGAGATGATTGTTGCTACAGCAGTTGTAGGTGCATGGTTAGTTCTCCCATTATAGAACTGCTAATCTATTTATAAGCTTCACATAGACTACCGGTGTTCAAGGTGGCTTCTCCTGCTAGAATGTAATCCATAGGCAAAAAGTACCTGAAACATATTAGCTTTATTGTGTTATTCTAAAccaaaatgagtgtgtgaaagacaaAGTACAGAATTACTATCAGAGGACTTTTGGGCCTCTAGATGGGCTACATTTGCAAAAATTAAAGCATTGAAGGATGCATGGAGAACAAGCAATCATACAAtgtttatagtaataataataatgacgcTTAATTAAGATGATCATAAGAACAAGTCTATATGAGATTTCTGTAGAGGTacatttcatgtttcttttGCACTTTGAGAATTTGTCAATCTTAATAATCCCTGTACTGTAGTTATGATGGTAGTGTctcatttttcagtgttttgtgttACTGAAGTATCTCCATGGAAATGTTACTTTTGACTCAATCAGCTCTATGTGGTGTGACATTTACTGATATCACCTGCACTAAAATTCACTTTATCACCAAGTTACTTGAAGTTTAGTGTGTATGCAATGTTCAATGTTTGTAGGGCAGATATTCACAGAGATCACAGTTTCAACTGACTCAATCATGTACATGCACTGTTACTGTTTTATCCTTGTGAATGTCCCTCTACTATATATCTTTGATTACAACCTTCATTAGTTGCCTTTTGCTCCCCTCTGTGTGGAGTCACTTTTTGTGCTGTCAGCTGGCTTTTAGGTATTGCAATATACATTCACATGGACATTGTGTCATCATATGATTTTCTGAGCTGTTGTTGCTTTTTCCTACTAAAACCACATGACAATCTTTTGTGTTGTGCATTGTGTATTGAAAACATTAACTGACCTGTGGTGTGTTAAGTAAATATGCTAGCCTCATTCTGGCTATTTTAGCacttgtgtgtgattgtatgaCACTGAACACGTGGcataaatttaatttgttttcaaaaatttataatttcatattttacGTTATGATTGTTTTAGATAATGAAtgtgtggcctttgtgtatTATTTGTCCTGAAATGGTCAAAGGATGTTCAAGGAATGCCATTTTGGTCCAAACTTGACAGCAATCCATTACCTCTAATTTATTAGCCAGTAAAGAGCCATTTAAATTATCTTCAATGCTGTTGATAGCAAGATGAAAGCAAGATGTTTGCATTTAAGTGACTAATAAGGCCTtgaaagttttctgtaaagccATATTCTACTAAAGGATTGTATGTGCAACCTACATTCTAGTCTGAGTAATGTACATGATTTAATGAAGGACTCCTCGTGTGGTAGCGTGGGGACTTCAATTTGTGTGTGAGGGTCTGTGTGTTATGAAATGTGTGCTTAAAATGCTTGATGGTTCTTTTATTCCACTATCTTTGTGTTCCTTTGAATGACTTACTCTAACAGATTTATGAATCATAATTAACCCCAGACAAACTCTTACTTATACTACATGTAACTTAATGAATTACCAACTAGGGGCCCTATTTTTGCAAACCATCACAGGAACCTGAATAATCATGATGTTGTATGGAAGACGAAGTATTATTAAGCACTCTTCACCTTGTACCAATAACACCACAAAGCTTTTAGAGAATGCAGGCCAGCAGGGCTTATAACACTAAGGTTTGGAATTTTTACATTTGGGCATAGTATAACATATTTCCTTTAGTTACTTGAAGCTGAGCTTTAACACCTAAGTTTGTTATTTATCTCAGCATACAAAAAAGAACAGAATGTCATATGCATCACATGTGATACGTGTGAATGATAGCACTCTATATTTTTTTAGCTATGCGTAAATTATGTTACACTTCCAaacaatgtgtaaaaatgaGGTAAAATGAGGAACAATAAAATTGTTTCTTTCAATGTTTGTAATGTCATTTATGTCAAGTTGTTTGTCAAACAAATATGGGTAAAAGTCTATTCCCAACTGTAATACAGCTATTTTAATAGTAATCATAGAGTGTACAGGAATCCATGTTCACAgctgtcatttcattttcattcactaCTCTGTATATAAAAGATTATATTAAACAGCATGGTGAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300547 lncRNA downstream 91517 12392363 ~ 12393653 (-) True G253843
TU300430 lncRNA downstream 267426 12217424 ~ 12217744 (-) True G253749
XR_003403159.2 lncRNA downstream 334225 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA downstream 334309 12143714 ~ 12150861 (-) False LOC113530483
TU300190 lncRNA downstream 580484 11904277 ~ 11904686 (-) True G253538
XR_003403193.2 lncRNA upstream 100578 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 155281 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 186382 12692345 ~ 12714075 (-) True LOC117599211
TU300707 lncRNA upstream 187656 12693619 ~ 12714080 (-) False LOC117599211
TU300797 lncRNA upstream 302417 12808380 ~ 12808599 (-) True G254052
XM_034311917.1 mRNA downstream 54675 12422647 ~ 12430495 (-) False LOC113530362
XM_026920263.2 mRNA downstream 54699 12422647 ~ 12430471 (-) False LOC113530362
XM_026920262.2 mRNA downstream 55734 12422647 ~ 12429436 (-) True LOC113530362
XM_026920264.2 mRNA downstream 56281 12422647 ~ 12428889 (-) False LOC113530362
XM_026921130.2 mRNA downstream 69204 12412074 ~ 12415966 (-) False LOC113530803
XM_026921119.2 mRNA upstream 39710 12545673 ~ 12572508 (-) False ntsr1
XM_034311642.1 mRNA upstream 40083 12546046 ~ 12572508 (-) False ntsr1
XM_026921118.2 mRNA upstream 43977 12549940 ~ 12572508 (-) True ntsr1
XM_026921372.2 mRNA upstream 109061 12615024 ~ 12654821 (-) False slco4a1
XM_026921371.2 mRNA upstream 109061 12615024 ~ 12654821 (-) True slco4a1
TU300417 other downstream 325810 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 343997 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 592168 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 592750 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 916640 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1623253 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1623253 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1623253 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1623253 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2193309 14699272 ~ 14704270 (-) False G255071

Expression Profile