RNA id: XM_026920437.2


Basic Information

Item Value
RNA id XM_026920437.2
length 1834
RNA type mRNA
GC content 0.38
exon number 13
gene id fam50a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16647823 ~ 16695031 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCCGTACCAGCAGATGGCAGAAATTTACCAGTGTTGGCCAGCACCCATTAAattcaagaagaagaagaagaagaagaagcaggaaTAGTTTCTTCGGCTTCACCGAGGTTGTTTATCGAAagtgtacatttatttttttacggAATTTGACAGTTCAcaatttacagttaaaaaaaacatatcagtcAGTGTAAAGTGACAATGGCGCAGTACAAAGGAGCGGCCAGCGAGGCGGGAAGAGCCATGCAGTTGATGAAAAAACGcgaaagagagagggagcaacTGGAgcagttaaaacaaaaaatagcaGAGgaCAACATTGTGAAATCCAACATTGATAAAAAGTTCTCTGCTCATTATGATGCTGTTGAGCAAGAGCTTAAATCAAGTACTGTGGggcTGGTCACTTTGAATGACATGAAAGCAAAGCAAGAAGCCCTTGTAAAGGAGCGAGAAAAGCAGCTGGCCAAGAAGGAGCAGTCTAAAGAGCTACAGCTaaaattagagaagcagaaagagaaaaagagaaaagaggaacAGAAGAGAAAAATTGCCAGTTTGTCTTTCAATCCAGatgaaggagaggaggaagatgaggaaaAGAATGGAGAGGATGAAGACTACACCCCAGTTAAGAAAAAGAAGCTGGGGAAGAACCCTGATGTCGACACCAGCTTTCTTCcagacagggaaagagagGAGGAGGAAAATCGCCTGCGGGAAGAGCTTAGACAGGAATGGGAGTGTAAGCAGGAGAAAATCAAGGGTGAAGAAATCGAAATCACTTTCAGTTACTGGGATGGATCTGGACACCGGAAAACAGTCAAGATGAAGAAGGGCAATACTATTCAGCAGTTTCTCCAAAGAGCCCTGGAGGTTCTGAGAAAAGACTTCAGCGAGTTGAGGTCTGCTGGAGTGGAGCAGCTCATGTACATTAAGGAGGATTTGATCATCCCTCATCACCACAGCTTCTATGACTTCATTGTGACAAAAGCTAGAGGCAAAAGTGGACCTCTTTTCAGTTTTGATGTTCATGATGATATCCGATTGGTAAATGATGCTACGGTTGAGAAAGACGAGTCTCATGCAGGAAAAGTGGTTCTGAGAAGCTggtatgaaaaaaacaaacacatatttCCTGCCAGCCGCTGGGAGCCTTATgatcctgaaaaaaaatggGACAAATACACGATCCGATGAGGTGGCTCTTTGCATCCATGTGGTGTTCagattttatgaatatattgcattttttttttccccagaggaTGGCATTTGAACAACAtgcaatattttaaagatttcttttgctctttttaaaatttgtgtGTATctctaaaatgaaatgtaccTCTATACAGGCAAATTTGTCTCAAACAGCTTATACACagtggaataaatgtaaattttatgaTACTTAAATAGATCTTATTAAGGGAGTAAAGTTTAGAAATATCCTTTAGGATGTAAATATATCCATTACTTTCCAACCTTTTGCATTAGTGCAatgtcattaataaataaaagttatttgcttttttttttttggtatttggaTCATTTTTCAACTTATATTTTTCAAGTTAATGTCTTTTAGTAATTACATATATTCTGGTAGTTCCACCTCCTGTGAATTCTGTTTTCTTGGACacagaatataaatatagtattgCTCTGTTGtaagttttattaatgtgcCAGGCAgtttattgtgtgtaatattattTGTGTTGCTTAACGATATAATGTATTTTCACATATAACACTGTACCAGCCAGCAACTGTATCACTGTGTCAGCCATTAAATAAAGTTGTCTTAGAGTTCAGAAACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K13119 FAM50, XAP5; protein FAM50

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303191 lncRNA downstream 10098 16636888 ~ 16637725 (-) True G256162
TU303189 lncRNA downstream 15375 16631392 ~ 16632448 (-) True G256160
TU303198 lncRNA downstream 18306 16628981 ~ 16629517 (-) True G256166
TU303194 lncRNA downstream 21206 16626242 ~ 16626617 (-) True G256164
TU303193 lncRNA downstream 21288 16626242 ~ 16626535 (-) False G256164
XR_003403153.2 lncRNA upstream 86097 16781128 ~ 16782877 (-) True LOC113530431
TU303233 lncRNA upstream 97886 16792917 ~ 16793280 (-) True G256197
TU303235 lncRNA upstream 99413 16794444 ~ 16794769 (-) True G256199
TU303249 lncRNA upstream 134184 16829215 ~ 16829435 (-) True G256212
TU303245 lncRNA upstream 156702 16851733 ~ 16852672 (-) True G256208
XM_034311723.1 mRNA downstream 122 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA downstream 122 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA downstream 310 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA downstream 404 16641460 ~ 16647419 (-) False si:ch211-207e14.4
XM_026920856.2 mRNA downstream 60075 16574026 ~ 16587748 (-) True sars1
XM_034312254.1 mRNA upstream 13159 16708190 ~ 16762693 (-) False cs
XM_026921164.2 mRNA upstream 13159 16708190 ~ 16762604 (-) True cs
XM_034311604.1 mRNA upstream 92770 16787801 ~ 16838649 (-) False si:ch211-210c8.6
XM_034311602.1 mRNA upstream 92775 16787806 ~ 16831861 (-) True si:ch211-210c8.6
XM_034311603.1 mRNA upstream 118353 16813384 ~ 16838649 (-) False si:ch211-210c8.6
TU302676 other downstream 827669 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1159964 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 1943553 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 2497242 14129216 ~ 14150581 (-) True LOC113530423
XR_004579669.1 other upstream 118353 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 981534 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1198050 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1590455 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 1814124 18509155 ~ 18513257 (-) False LOC113530839

Expression Profile