RNA id: XR_003403157.2


Basic Information

Item Value
RNA id XR_003403157.2
length 2296
RNA type misc_RNA
GC content 0.45
exon number 11
gene id trim101
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12113622 ~ 12121372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGAGCAACAGACAAAAATCAAAGCAGAGGAAGAGATCCAGGACGAATTACAGGCATATAAAAGCTGATCTGAGGATGGTAAGATCCTTGAAGAGACATAACAGTTTTCTCACACACAACGTTACTGAATTCTCTTAGTGCCTCAGTGTTGGGACACAATCATGTCCCTTCCACTGGACCTGAGCTCCTTCCACAGGGATGCTTCACTGGGCACGCTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGGTCTTTACCAAACCTGTGGTCATACTGCCATGCCAGCACAACCTCTGCCGCAAATGTGCTAACGAACTTTACCAGCCTTCTCTGTTCCAGGTTGGGATTGGAGGTCGTTTTCGGTGTCCATCCTGTCGGCACGAAGTCGTTTTGGACCGTCATGGTGTTTATGGGCTCCAGAGGAACCTTCTAGTGGAAAATATCATTGATGTCTACAAGCAAGCATCTGCAAGTTGTAGGCCTCCACCGAAACCACTGGCACAAATAAACTGTGAAGAACACGAAGGGGAGAAGCTGAACATTTACTGCATCACCTGTCAGATCCCCACGTGTTCACTCTGTAAAGTGTTTGGAGCACATAAGTCCTGTCAGGTGGCTCCCGTCTCTGATGTATATCAACAGCAAAAGaCCGAACTCAGTGATGGGATTGGATCCCTGGTTGCCACTAATGAGTGCATCCAAGCTTGCATAAATGATCTGGAGGAGATCTGTAGGAGTGTTGAGGAAAATAGCAGAAACCAAAAGCAGATACTGTGTGAGAAGTTCGACCGTATGTGTGGTATCCTGGAAGAAAGACGTAAGATTATGTTACAGCGAATCACATATGAGCAGGATGAAAAGACAAGCTGGGCCCAAAGCTTGGTACATACCTACAGTGAGCATGTTGACACAAACTCAAAGTTGGTGCAGACTGCCTTGAACGCCATGGAAGAGCCAGAGATGGCTGCATTTCTTCAGACCTCAAAAAACCTCATTGAACAGGTCAGCGAGGCAACTAAATCTGCTCCATTGCAGACCTTACAGCCTGGATATGAAAACATGGATCACTATAAGGTTGATTTTAATGCTGAGGAGAGGGCTCTCTACCAGCTAGATTTCATCAAACCTGAAGAGGAGGTTGAAGAGCCTCCAGAAGAACCAGCACCAGAACCTGAGCCAGAAGTGTTACCAGAACCTGAACCTGAGCCTGAATATGAACCAGTGCACAGTCTGGTAGAGAGCTCTGAGCCAGACAATGAACTGAAGTTGGAAAACTATGAGATAAAGAATGTTTTATCTGAGACGAAGGAGGAAAACCAGTTACAAGTAGAGGGATGTTCAGCGAGACCAAAAGATGTCATATGTGAGAAAAGTGGACTGAACACCCAACAGGCCATCATCCATATATTTTACGTCCTGGCCTTACTCTTCATCCTCCAGAGAGTATGGGGGAACATTCAGTGCCTTTTTTGCATATAGCACGGCTGGGGAATTACAGATTTCAGGGTGAACCCTGCTCAATGGGAGCCCAGGACAACAGAGAGATGGATCAGAGCACTGATACAAGCTTTCACAACTACTCTGATGCCCCAATGTGGTAGACAGACAGAAGCAAGCAAGCATACAAACAGTTAGTCAGcctgcagctgcagatcactcAGCGGTGGGAGCCAGCTCTCCTACTGTTACAAGTGAGCCGGCTCGTATCAGCTTCTCCTTCTCCTGGCTGAATCCACTTGCCAAGAAGAAATGAATGCTCCTCTTAGAGAGAAGCCATCAGGTCCACAAGCCATTTTCTTCAGCTGGCCATAACGTACAGGCTTTACCTCAGGGCAAACTGAATGTTGTCCAGTAGGCCCACTACCACTCCTGCTGTAATTTGTAAAAGATGTATGCACCAGCTATAAGTACATAACAGATCAGTTCCACATATATGCTTTTACTTGTTACACATAGCCTTGATTATTACAAACTATATGGACATAAATTCTAAAATAGCTGCCTGAGATAGAAAGAACTTCATGTATGAAATTGTTGGTTATGAGAAAGACTTAGTGTTTAGATATATTTCTACATTGGTTTGGTTGTGACTTGAAGGTTGAAGTCATACTGTAGTGCAGTATTGAAGTGGTGCTGATGGCATAGCTGTGAAAGTGTTGCATTAGTAAAAATGTGGCAACACTTGTTTGTTGGactgtttatgtgtttgttttcaaTATCTATTACAGGTCACATACACATTAAGCAATACTTAATGatgaatgtgaaaaataaaacatactgaCAACTGTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300257 lncRNA upstream 29966 12083043 ~ 12083656 (+) True G253599
TU300249 lncRNA upstream 100127 12013279 ~ 12013495 (+) True G253593
XR_004579668.1 lncRNA upstream 121501 11991640 ~ 11992121 (+) True LOC113530280
XR_004579667.1 lncRNA upstream 139078 11946332 ~ 11974544 (+) True LOC117599216
TU300200 lncRNA upstream 172385 11939079 ~ 11941237 (+) True G253548
TU300495 lncRNA downstream 244688 12366060 ~ 12366461 (+) True G253798
TU300538 lncRNA downstream 280242 12401614 ~ 12406705 (+) True G253835
TU300551 lncRNA downstream 295585 12416957 ~ 12419048 (+) True G253846
TU300555 lncRNA downstream 300726 12422098 ~ 12423038 (+) True G253847
TU300556 lncRNA downstream 300726 12422098 ~ 12422999 (+) False G253847
XM_026921197.2 mRNA upstream 1469 12089547 ~ 12112153 (+) True dnajc5ab
XM_026921106.2 mRNA upstream 90184 12021656 ~ 12023438 (+) True bhlhe23
XM_026920869.2 mRNA upstream 205704 11900398 ~ 11907918 (+) True tfip11
XM_034311550.1 mRNA upstream 291862 11808991 ~ 11821760 (+) False pm20d1.2
XM_034311551.1 mRNA upstream 291862 11808992 ~ 11821760 (+) False pm20d1.2
XM_026920443.2 mRNA downstream 1759 12123131 ~ 12137818 (+) True tpd52l2b
XM_026920444.2 mRNA downstream 1759 12123131 ~ 12137818 (+) False tpd52l2b
XM_026920445.2 mRNA downstream 1759 12123131 ~ 12137818 (+) False tpd52l2b
XM_026920446.2 mRNA downstream 1759 12123131 ~ 12137818 (+) False tpd52l2b
XM_026920449.2 mRNA downstream 1760 12123132 ~ 12137818 (+) False tpd52l2b
TU299947 other upstream 213258 11892150 ~ 11900364 (+) False G253367
XR_003403199.2 other upstream 698173 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 698173 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 845939 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 853704 11259847 ~ 11259918 (+) True trnah-gug_14
TU300294 other downstream 20115 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 245371 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 715679 12837051 ~ 12850995 (+) False rbbp8l
XR_004579688.1 other downstream 1948856 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 1948897 14070269 ~ 14072216 (+) True wfdc2

Expression Profile