RNA id: XM_026920445.2


Basic Information

Item Value
RNA id XM_026920445.2
length 2480
RNA type mRNA
GC content 0.42
exon number 9
gene id tpd52l2b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12123131 ~ 12137818 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCATCAGTGTGCGCCGGAACAGAGGGAACACAACGGCCCTGAGTGTAGGCATCAGGCTGAGCTGGCTGCTTacggctgctgctgctggtggtgaaTTTCGTTAGCGGATTTCTGTTTTGAATGTTGTCGATGCAAGTGTAGCAGTTCTTCGATCAGAcgtatttttttatacaatactTTATCAACAAGTAATTGTCTAAACTCTTTTTACGAGCACAATCTCCTTGTTTTTGGTTCGACGCCATGGATTCCGCCAGTCAAgacatcaatCTGAATTCTCCAAATAAAGGCCTGGGCTCAGGCTCTCTGTCAGATATGCCAGCAGAGATAGGTGCGTCTGCTGGGAGTCCAGTAACACTTCCTCCAGGACTAACAGAGGAGGAGGCAGAAGAACTAAAGACTGAACTCACCAAGGTGGAGGAGGAGATTCAGACTCTACGGCAAGTACTGATGGCCAAAGAGCGCCACGCATCCGAACTGAAGCGCAAGCTCGGCCTCAGCCCTCTGAGCGAACTCAAACAGAACATCACCAAAAGCTGGCAGGACGTGCAGACCTCAAATGCCTATGTAAGAACGAATGAGAAACTGGGCCAGTGGAACGAGAAGATTGCAGGATGTGAACTATATCTTTCAGCCTCTGCCACTCTGGATGACATTGCCAACTCTGAAGtGTACAAGAAGACTCAGGAAACACTGTCTCAGGCAGGACAGAAGACCTCAGCAGCCTTCTCCACCGTGGGCTCTGCTATCAGTAGAAAACTAGGCGACATGAGTAGCAACTACTCCATTCGCCATTCGATAAGTATGCCAGCTATGAGGAACTCCCCAACTTTCAAATCATTTGAGGACAAAGTTGGAAATCTTAAGTCGAAGGTGGTTGGAGGGAGGGCCAATGGCGATGGCCCCGAGTCTCCGACCGAGTCGAACCCTGTGCAGGACAACGCACCATTCTGAGCCTCTACACTCCCAAACGAACACTCATCTCATCTGTTAGTGAAGCCTGACCCTCTACAGCCACCATCacttctctcactcactctatctctgcctctccctccctcctccagCTACTCTTTAGACCTAAAGCTTGCATGTGCTCGTCTCACCTCTCCACTCACATCACAGCTTGCGTGACATGGACTCATCCAAAAAGGAttgtacaaaaaaagaagaaaaaaatgttacaacCATTTTGTATTCTAAAGTATTTTACACTGCTTTGCATAATGTTTTTACATAACGTAAATAtctatatatgaatataaagaatacaaataattatatttaaactgTACTGCCAAGCAGCATTCATCAGAAAGGGGAAAGGAGAAGAAACCTGGAGAGGGGAGAGGGCTGCTCTTTGAACTACTCACACAAGGGGAACGTGCTGCAGTTTTCTACGCTGCTCTTCATTAATTTGAGGACTTTTTTACTCCGAGTACAATGTGAAGCAACGCTTTACAGTACATCTGGTGAATGTCTAATCCTTTGTCTGCCTTACACTATCACCCCATTTCTTTCTGTTGATTTTTGCTGGTCAAAGCAAGTCACATTAaggttcttttctcttttcctgtcCTCTTTTGCTTTTTCTGCTCTTTGTTTCTTGTGTTGATTTGGTGTACCATAGTGGTGGGCTTGTTCTGTTTACGCCTTGTACGTTAATGTCCGCCTGCCTTTGCTTTTATTCCAGTGCTTTGTGCCAGCCAACTGAGGCCATTTAAAGACCTTCTGCTGTTGAAACGAAGAGCTATTTCACCAACTCGCACTCACACTAATTACTATAAGAGTCACTTTTGAATATAGCTCTTGCTTTAGCCTGCACTACCCCAATATGTAACACACTGACTGAGACCAGTGGTGTCAAACTCTTTTTGTTATTTACGGTATATATTAGACTGCATACTTGTGTAGTTTGTTTGGTAGCACGGTCACTTTGCATTTCAAAACCAATCATTGGCCATTTTTTCAAttgttaatcatttttattttgcctcATTTCTCCTATTTCATCATTTCCGCTTTTCTTTGTGTCAGTGGATTGAATTATTTCAGTAGACTGCTACACATTATTATCCTAGACTGAGCTAGAATTTGAGGGATTTATTATATCTATTTGCCAGAAATATGTACAGCTATGCTGCCAGTAATACACAGCAGGGGTATTGGGATTCATCTTAATGTCATGACTGTACCTTTCTATTATCAATGAGCAAAAGGTGTATCActttgagcattttttttttttttttttttttaatataaatattagagAAATGATATATCCCTTAAGCTGCATATATGTAAATGGGACCGGCTGTTGTAGAGCACATGAGCACAATATAGCTTTAAATCTGAGATTGTAGCTCAACTTTACAAAATGAGAGGATCTGGTTTTCTTTTAAGGAATTGGTGGAATACTCATTTatgttaatgtcagtgtttgttctgtttatcAATAAAGCATTCCTTCAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300257 lncRNA upstream 39475 12083043 ~ 12083656 (+) True G253599
TU300249 lncRNA upstream 109636 12013279 ~ 12013495 (+) True G253593
XR_004579668.1 lncRNA upstream 131010 11991640 ~ 11992121 (+) True LOC113530280
XR_004579667.1 lncRNA upstream 148587 11946332 ~ 11974544 (+) True LOC117599216
TU300200 lncRNA upstream 181894 11939079 ~ 11941237 (+) True G253548
TU300495 lncRNA downstream 228242 12366060 ~ 12366461 (+) True G253798
TU300538 lncRNA downstream 263796 12401614 ~ 12406705 (+) True G253835
TU300551 lncRNA downstream 279139 12416957 ~ 12419048 (+) True G253846
TU300555 lncRNA downstream 284280 12422098 ~ 12423038 (+) True G253847
TU300556 lncRNA downstream 284280 12422098 ~ 12422999 (+) False G253847
XM_026920441.2 mRNA upstream 1759 12113622 ~ 12121372 (+) False trim101
XM_026920438.2 mRNA upstream 4256 12113622 ~ 12118875 (+) False trim101
XM_026920439.2 mRNA upstream 4256 12113622 ~ 12118875 (+) False trim101
XM_026921197.2 mRNA upstream 10978 12089547 ~ 12112153 (+) True dnajc5ab
XM_026921106.2 mRNA upstream 99693 12021656 ~ 12023438 (+) True bhlhe23
XM_026920540.2 mRNA downstream 3654 12141472 ~ 12143527 (+) True ppdpfb
XM_026920662.2 mRNA downstream 179097 12316915 ~ 12364148 (+) True dnmt3bb.1
XM_026920661.2 mRNA downstream 179097 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_034311868.1 mRNA downstream 179097 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_034311869.1 mRNA downstream 179097 12316915 ~ 12364148 (+) False dnmt3bb.1
XR_003403157.2 other upstream 1759 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 222767 11892150 ~ 11900364 (+) False G253367
XR_003403199.2 other upstream 707682 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 707682 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 855448 11267611 ~ 11267683 (+) True trnaf-gaa_28
TU300294 other downstream 3669 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 228925 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 699233 12837051 ~ 12850995 (+) False rbbp8l
XR_004579688.1 other downstream 1932410 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 1932451 14070269 ~ 14072216 (+) True wfdc2

Expression Profile