RNA id: XM_026920458.2


Basic Information

Item Value
RNA id XM_026920458.2
length 3127
RNA type mRNA
GC content 0.47
exon number 8
gene id sephs3
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11533655 ~ 11542024 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGTACTCTACATAGGGTATAAAATAATGGGTTCTACTCCCTTTGTAGTACACTAAGTTCAAAATAgaaagccatttgggattcacccttgtacacaacagccaatatgCTGCAACCGTTTTTACATCATCCATATTCACTTCCTTGTAGGAAACGATATTTGCTAGTCCACGCCGTTTCGTTATTTCGCCGCCTGAATGAGAGGCGAATAGCTGGCGAGAGCTAGCCATGTCCGGTTCGCCACCGTCGGCCGATTCGGCGGGATTCTCGGCCTTTTACCCGGCCAGCTACCAGGCTCCAGAAACTCATGGCCTGGACCGCACTTTTCGGCTCACGGCCTTTTCCGATATGAAAGGATGAGGGTGCAAAGTCCCGCAGGAGACACTGCTCAAACTCCTGCAGGGACTGGAGCCCGAGGCCCAGCCGGCACAGGACGGAGCGGGGACAGGAGCCGGGGACGAGGCCTCGGAGTTCACTCAGCTGGCTGCGGTCTCACAGGGTCCCCGCCTGGGCATAGGGATGGATTCTTGTGTCATTCCTTTGAGGCATGGAGGTTTGTCCCTGATCCAGACTACAGATTTCTTCTATCCATTAGTTGAAGATCCCTATATGATGGGTCGTATAGCGTGTGCAAATGTGTTGAGCGATCTGTACGCGATGGGAATTACTGATTGTGACAACATGCTGATGCTATTGAGTGTCAGTCAGAAGATGAGTGAGAAGGAGAGAGAGCAGGTGATGCCCTTAATGATGAAGGGTTTCCGTGACGCAGCAGAAGAGGGCGGGACTTCTGTGACAGGCGGACAGACAGTTGTGAACCCTTGGATCATcatagggggcgtggccacggTAGTGTGCCAGCCTACTGACTTCATCATGCCAGATGGTGCTGTACCGGGTGACGTGCTCGTTCTGACAAAACCTCTTGGAACCCAAGTAGCCGTCAACGCTCATCAGTGGCTGAACATACCAGAAAAATGGAACAAGATCAAGTTGGTGATCTCAAAGGAGGAGGTGGAGCATGCTTATCAGGAGGCCATGCTCAACATGGCTACCCTTAACCGCACTGCTGCTGCTCTAATGCACAAGTTCAACGCACACGCTGCCACTGACATCACCGGCTTCGGGATCATTGGGCACGCACGGAACCTGGCCAAGCAGCAGCGCAATGAAGTGGCCTTTGTTATCCACAATCTGCCAATCCTCGCCAAGATGGCTGCTGTCAGCAAAGCCGGTGGTAACCTGTTTGGCCTTCTGCACGGCACCTCCGCCGAGACTTCAGGTGGTTTGCTGATCTGTCTGCCACGGGAGCAGGCAGCACGCTTCTGTGCTGAGATGAAGGCGAGCCGGACGAGCTCACTGGGCGATGGACAGCAGGCCTGGATAATTGGAATCGTGGAGAAGGGTAGCCGCTGTGCACGCATCATTGACAAGCCCCGCATCATTGAGGTGCCATATCGTGGCCTCGCAGCAGGCAACACACAGGAGGgcaccaacaccatcaccactcCCACCGCCACCAACACCAGCAGCACCCCTGCTGAAGCTCAGGCCAGCCTGGCACAGTGACACAGCCTCTAACACAAGAGTGTAATAGGAATGTTCATTGTTCATCTTTGTGCTTTGTAcatttcacctctctctctctggatgtGGCTACTCTGGTTGTGTGAGTCCTGAAGGGTGTGTACTTTAcaaatgtgtgatgtgtagtttgTGCTGGTAAGACTGggataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaatgaatgcatgcatgcatgtagtgagagtgagtgtggtagtgtgcatgtgtgaatcAGAGGGAATATGAGAGAGGGGATTTGTGCATTCACTCCGCTTTTCATTTCATCTCCCTGTTCAGCCGATGGGTTGAGAGCAACAGACCaaaaattttctttttacctGGTGGGAGGTGGAATGGattgcttgtttttcttttttctttctttttcatccaCTGTACTCTGTCAATCCAGTGATAGAAAAGCTTCCCCTTCTAACCCTTGGGTATATTTTTGCTGAAAAGAATGTTCACTGAACAAGCATTGTAGTTGTAGGCACAAGTTGCAAAACCCAAACTGATGGCTTGTTGGAAGCACTTtgacttttttcagttttccatCACAGTTTTGCAAAGTCCAGACCCTTTCGATCAATTGCATCTTTTTATGACAATCAAAGCCAATTAAATCCATTAGAAAACATTCTTTCAGCAAACCTTGGGGAATTCAAATACAATCAAATCAAGCCaaacaaattgctgaaaataatatttaatatgggcatatttaatttatttgatatttaattatattatgtgtttgtgtcatAGATTGAATGCAATCAACCAAATTAGGGAAGGTTAAATAACTGATTATTCTGGTGCCGTTGTTTTAGTTCTGATCAGCTTGACTTTCTCATATAGTTGCTTAGCTGTCTGAGATGGTTGAATGACttgttaaatgtttacattcatGTAGGTCTCTGGAATATGTGCTTTAGTATTAATTTGTGAAACATTTTGCATTTGATCATGTGCTGTGTATCTGTACTGAGGTTGGCACTGGGGTTTTAAAATCATTGCTAGTATTGGTGCATTCTTTTCATTATGTATTTAGGCTGCAGTAGCTTTTGGGAGGTGTGTACCTGGTTTTGTGTGATGCTTAGAATTATGGCAAGCCTGTTTTCTTATTAATGCTGAGGTATATGTCACATATCCTCTCTCTGTGCTAGCATTCTCATTTTGATCAGTGGGAAATCGGATGTCGGACTCCTCCCCATGGATCAGAGCGAGGATTGAGCAGCTCTCTTTGGTCCTGTGGGTGAGGCCGGAATCCCAGAGTCATCAGCTGAATGGCTGCAGTGGATCAGAAGCACTCACCCTTCCTGCTCATGATGCATTTCCCGTTAAACCCCAGCCAATGGGGATGGGAGAAGTTGATGTTACTTGTAAGGATGGGTGGGACCTGGTCTGCTTAGTCTATTCAGCTGACTCAGGCTTTGTCCTGATTTACATGTCATCTTCAGACAATAAAACAGATGAAGGGTTTTGTGTAAA

Function

GO: NA

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299787 lncRNA upstream 26028 11506458 ~ 11507627 (+) False arhgap4b
TU299793 lncRNA upstream 54286 11470051 ~ 11479369 (+) False zgc:103759
TU299791 lncRNA upstream 70898 11461714 ~ 11462757 (+) True G253248
TU299761 lncRNA upstream 119021 11392434 ~ 11414634 (+) False wu:fa11c10
TU299755 lncRNA upstream 157035 11372995 ~ 11376620 (+) True G253212
TU299813 lncRNA downstream 52480 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 187016 11729040 ~ 11729292 (+) True G253301
TU299903 lncRNA downstream 240884 11782908 ~ 11784064 (+) True G253329
XR_004579731.1 lncRNA downstream 255233 11797257 ~ 11799304 (+) True LOC117599271
TU299904 lncRNA downstream 255813 11797837 ~ 11799302 (+) False LOC117599271
XM_026920941.2 mRNA upstream 405 11530650 ~ 11533250 (+) True ssr4
XM_026920851.2 mRNA upstream 5336 11516389 ~ 11528319 (+) True ikbkg
XM_034311966.1 mRNA upstream 5336 11516389 ~ 11528319 (+) False ikbkg
XM_034311967.1 mRNA upstream 5336 11516390 ~ 11528319 (+) False ikbkg
XM_034311968.1 mRNA upstream 5336 11516391 ~ 11528319 (+) False ikbkg
XM_034312197.1 mRNA downstream 58618 11600642 ~ 11620370 (+) True fam120c
XM_034312198.1 mRNA downstream 59104 11601128 ~ 11620370 (+) False fam120c
XM_034312243.1 mRNA downstream 90496 11632520 ~ 11640530 (+) False hsd17b10
XM_026920141.2 mRNA downstream 92581 11634605 ~ 11640907 (+) True hsd17b10
XM_026921031.2 mRNA downstream 129374 11671398 ~ 11714810 (+) False tafa1a
XR_003403199.2 other upstream 118206 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 118206 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 265972 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 273737 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 296293 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 350126 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 571598 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 599463 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 824719 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1295027 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile