RNA id: XM_026920460.2


Basic Information

Item Value
RNA id XM_026920460.2
length 2023
RNA type mRNA
GC content 0.51
exon number 9
gene id krt8
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14699254 ~ 14704080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGGCTATTCTGCCTCATCTGCCTGGGTTTCTCCAGCAAAGCAGACACACGCTTCCCCTTTGCCGTGCTATCCTTCTTACTCTCACTCTCTTATTCTCAGCCACTTCAGGGCAGAAGATCTGCAGGCACAATGTCATTCGTGAAGAAATCATCCTACACTGTGAAGTCCTCCTCCTCTGCGGCTGCACCACGTAGCTTCAGCAGTCTCTCCTACTCAGGCCCCAGCCTGGGCCGACAGAGTTACACAGCGCGCAGCTCCTATGGAGGAGTCAGGAGTGGCTTGGGAGGTGGGAGCTACATCAGTAGCTCCACAGCCTATGGAGGTGGCATGGGTCTCGGTATGGGAATTGGTGGCGGAGCTGTGGCACCCATCACAGCAGTGACAGTCAACAAGAGCCTCCTGGCCCCTCTGAACCTGGAGATCGACCCTAACATCCAGACCATCCGCACACAGGAGAAAGAACAGATCAAGTCCCTCAACAACCGCTTCGCTTCCTTCATAGATAAGGTACGCTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAATGGAGCCTCCTCCAGGAGCAGACTACCACCCGTTCCAACATTGACGCCATGTTCGAGGCCTACATTGCCAACCTCCGCAGACAGCTTGACAGTCTGGGCAACGACAAGATTAAGCTGGAGGCCGACCTGCACAACATGCAAGGCCTGGTCGAGGACTTCAAGAATAAGTATGAAGATGAGATCAACAAGCGCACAGAGGCTGAGAACGACTTTGTCCTCATCAAAAAGGATGTGGACGAGGCCTATATGAATAAGGTCGAGCTGGAAGCCAAGCTGGAAAGCCTTACAGATGAGATCAACTTCCTCAGGCAGATCTATGAAGAGGAGATCCGTGAGCTTCAGTCTCAGATCAAGGATACCTCAGTGGTGGTGGAGATGGACAACAGCAGAAAACTGGACATGGACGCCATTGTGAGTGAGGTCCGTGCTCAGTATGAGGACATTGCCAACCGCAGCCGTGCTGAGGCTGAAACATGGTACAAGACTAAGTTTGAGGAAATGCAGACATCCGCCAGCAGGTACGGAGATGACCTCCGATCAACCAAGACAGAGATTGCTGATCTCAACCGCATGATCCAGAGACTGCAGTCTGAGATTGATGCTGTGAAGGGACAGCGTGCTAACCTGGAGAATCAGatagctgaggctgaggagcGTGGAGAGTTGGCAGTGAGGGATGCAAAGGCTCGTATCAAGGATCTGGAGGATGCCCTGCAGAGAGCCAAGCAAGACATGGCACGCCAGATCAGAGAGTATCAGGACCTGATGAATGTCAAACTGGCCCTGGACATTGAGATTGCCACCTACAGAAAACTCCTGGAAGGAGAGGAGGACAGACTTGCCAGTGGAATCAAGGCCATCAACATCTCAAAACAAAGCACAAGCTACAGCTCCTTCCCTATGGAGAGTGCTGGCAGTGCCTACAGCAGCTACTCCAGTGGTTACTCTAGCGGTTACTCCACTGGTTACGGTGGTGGCTTTGGTGACAGCAGCACAACCCAGAGCAAGAAGAACATCGTCATCAAGATGATTGAAACCAAGGATGGCAGAGTTGTGTCCGAGTCTTCTGAAATTGTCCAAGATTGAGTGGAGAGTGCACTTTCCACTTCTGCCCTTTAACCTTGTCTCCCCTTTAACCTTGTCCATTCCTCATCCTTCCTCTAAACACGTAACATAGCTGTCTGAAGTAACTAGTCGCAGAAGGATACAGCCATAAACCAGGCTGTAAACCAATACATCCTTAACTCTGACCAAAGGGTTTGAAAGGACCAAACTATATCATTTCAcgttgtgccttaggcttgttTCTGCATAGTGCACTAAAAGAAATACTCTCAGTCTGCTCACACAAGCTGTACTGTCTTGCACAACATGTTCTCCAGTCAACATCTATGAGTTGGAGAATGCTAGATCTGCCACCAACATGAGAAACTCCTGTTACTGTACTGATTGCCCTGTGACAGTATTCAGG

Function

GO:

id name namespace
GO:0016363 nuclear matrix cellular_component
GO:0045095 keratin filament cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07605 KRT2; type II keratin, basic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301850 lncRNA upstream 25302 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA upstream 25302 14669804 ~ 14673952 (+) True G254991
TU301853 lncRNA upstream 25302 14669804 ~ 14673952 (+) False G254991
TU301815 lncRNA upstream 83980 14607079 ~ 14615274 (+) True G254966
TU301817 lncRNA upstream 221545 14443189 ~ 14477709 (+) True G254967
TU301928 lncRNA downstream 1188 14705268 ~ 14705536 (+) True G255057
TU301929 lncRNA downstream 1617 14705697 ~ 14706521 (+) True G255058
TU302078 lncRNA downstream 174832 14878912 ~ 14879327 (+) True G255189
TU302114 lncRNA downstream 292745 14996825 ~ 15002630 (+) True G255209
TU302099 lncRNA downstream 350029 15054109 ~ 15054471 (+) True G255198
XM_034311901.1 mRNA upstream 124944 14530835 ~ 14574310 (+) True foxp1a
XM_026921208.2 mRNA upstream 124944 14530836 ~ 14574310 (+) False foxp1a
XM_026921210.2 mRNA upstream 124944 14530836 ~ 14574310 (+) False foxp1a
XM_034311903.1 mRNA upstream 124944 14531211 ~ 14574310 (+) False foxp1a
XM_034311902.1 mRNA upstream 124944 14531372 ~ 14574310 (+) False foxp1a
XM_026920806.2 mRNA downstream 27514 14731594 ~ 14735982 (+) True LOC113530635
XM_026921036.2 mRNA downstream 50473 14754553 ~ 14822158 (+) True plxnb1a
XM_026920272.2 mRNA downstream 121502 14825582 ~ 14834227 (+) True si:ch211-220i18.4
XM_026920153.2 mRNA downstream 144475 14848555 ~ 14864652 (+) False prkcbp1l
XM_026920156.2 mRNA downstream 144475 14848555 ~ 14864652 (+) False prkcbp1l
TU301848 other upstream 25302 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 25302 14669804 ~ 14673952 (+) False G254991
TU301462 other upstream 627038 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 627038 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 627096 14070228 ~ 14072158 (+) False wfdc2
TU302131 other downstream 413032 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 413032 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1506570 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 1659469 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 1669162 16373242 ~ 16396212 (+) False LOC113530371

Expression Profile