RNA id: XM_026920465.2


Basic Information

Item Value
RNA id XM_026920465.2
length 2540
RNA type mRNA
GC content 0.51
exon number 6
gene id zbtb46
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15455518 ~ 15561114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTTAAACTGGAGCTGTCCACGGTTTGACGTGTCTATTCACTGTGCCGCCGTGCGGCTGAGAGCGCGTGCTCGCCCTGCCTCATTTCCTGTGGCTAAgactcgagagagagagagagagagagagagagagagagagagatgggttcCTGATACCGAAACGCGGAAAAGCAGGGGTGGGAGagtttgagggaaaaaaaagagacaggcGGAGAGAACGGGAATTTTACACTGACAGGAGCGTTGGGTAAGAAACTGAATTTCTGAAATCTTTTGTTTCTCACACTTTCACGTTGAGAAATTGAAGCCCGACGCGTCGCCAGCGCTCGAACCCAGAACTCATGGGTTAACAGAATCTATCCAGAAGACACAGCCACTCAGTGATCCAATGAACAACCGTAAGGAAGATATGGAAATCGCATCACACTACCGGCAGCTCCTGCGTGAGCTTAATGAGCAGCGGCAGCATGGCATCTTGTGTGATGCTTGTGTGGTTGTGGAAGGTAAGATCTTCAAGGCACACAAGAATGTACTGCTAGGCAGCAGCCGCTACTTCAAGACACTCTACTGCCAGGTGAAGAAGGGAACAGAGCAACAGGCTACCATCACACACCTGGACATTGTGACAGCACAGGGATTCAAGACTATTCTGGACTTCATGTACTCTGCACACCTGGCACTCACCAGTAAGAATGTTATTGAGGTGATGTCTGCTGCCAGCTACCTGCAGATGACAGAGATTGTACAGGCATGTCATGGCTTCATCAGGGCAGCGCTAGATATTAGCATTCGTTCTGAGCTGGCTGACATGGAGCTGGCCAATATAGAGATTAGTGGCATGGTTGGAACGGGTACTGCTGGAGGAGCCTCTGAAGCACTGGTTTCCATGATCTCAGCTCGCAGCTCCTCACCATGGCTGGTACGTCGTACCAGTCCTGCCAACTCGTCAGGGGACTCGGCAATTGCCAGCTGCCATGAAAGTGGCAGCACCTACAGTAAGGAGGATCATGAGCCTAAGAGCCATGAGGACCCATGGCCAAATGACTACCGCTCACTTCAAGTCAAAGAGGAGCAGGGATCACCATCCAATGCTCAGGACAGGACCAGCCAAGAGGCACAGGGAACACCCATAGAGCAGAGCAATGGAGGTGAAGGGAGCTGGCAAGCACCTAGTTCAAGACGAAGGAAGAACCGAAAAAACAAGGACACAGTTAGGCACATCATGCAACAGAATGAGGGCAGTAGTCGTGGAGGTTCTCCGATGTCTTCCATGATTTCCACAACCAGTTGGAGCTACAACAGTCAGGCTGACATTCCAGGAGCAGATGAGGCTGAGCCCAGTTCAGATACCCGAGACCAGCGGATGGACTTTTTCATGAAGCAGGAGGAAGCACTAGCTGGTGAGCCAGGCTTCCATGGCTCCTCATTGGCCAGTGACAGGGAGGAGGTGGTGGGAGAAAGTCAGGAACAAGGTGGTTCTGTGGCCAACTTGCGGGCAGCGCTAATGAGCAAGAACAGCCTGCTGTCTCTTGGGACAGAGATGTTTAGTGAAGAAAATACCCTGCTGTTTGACTACTTGCCCAAAGGAGGACACTCTCTCTCCCGCTCTCACTGCTCCAGTGGTGGCCATAGCAAACGCATGGCGTCTTCATCCTCTTCTCCACCCACTCTcgctcctcttcttcctctgcaGCCCCCAGGGGCTTTCAACCTGCCTCTGGCCTGGGGCTCCTCAGAAAATCAAGATGTGGAGCAGGACACAGAGCCCTCACCCTCTGAGGAAGAAATGCAAGAGGAAGAAGATAGTCAAAGTAACACTGCagGCAGTAGCCAGGCTCCTGTAGAGGTGGATCAGATTGCAAAGGggcagcatggtgtgtgtgtggcacaagAGCTGGCCTGCTCCCTGTGCAAGCAACTGTTTAGCAGCCTGCTCCAGCTGAGGCAGCATGAGTACCACCACACATTCTCGTTAATGCAGCTCTCTTTGGACTGCTTTGAGCCGCGGCACCCCCCCAGTGCCCGCTACCGGTGCTCACACTGCCCAGCCAGCTTCACACTGAAGTCCAATGCTGACCGCCACGAGAAGACAATTCACTTCAAGTGCAAGCTCCTACAGTGTACCTACTGCCTCAAGCACTTTCGTGACCGCACTGATCTCAATCGTCACCTGGCATCTGTTCACTCAGGAGAGCGAGGCTATGCATGTCCGTCCTGCTCCCGTGCCTTTGCAACACAGAAGAACCTCGTCACGCATGTCAGGCTCTGCTTACAGGTGGATGCCCCTTCTGCCAAGCCACTTTCCAGCCCCCATAACAGAGACTGACCCTGCCCTTTTTTATTTGCCACCTAAATGGTAATTTTAGCCTGTAAGCTATAATGAATACAGCAAagcatcgtcatcatcatctacTCAGGGGTCCTTTTTTGGCAAGAGCAGTGAGATTTGTACAAGCTCTGTACCAAATACATACCAGACATATACAAAAGTAACATTTTTGTACAAATGTTAATTTGTGAATTAAAGtctatatttcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302438 lncRNA downstream 11703 15454133 ~ 15454354 (-) True G255506
TU302361 lncRNA downstream 133606 15332126 ~ 15332451 (-) True G255435
TU302326 lncRNA downstream 205952 15258485 ~ 15260105 (-) False LOC113530775
TU302304 lncRNA downstream 238097 15182157 ~ 15227960 (-) False G255385
TU302303 lncRNA downstream 280085 15182157 ~ 15185972 (-) True G255385
TU302664 lncRNA upstream 91736 15652847 ~ 15657703 (-) True G255693
TU302681 lncRNA upstream 182629 15743740 ~ 15820154 (-) False znf512b
TU302675 lncRNA upstream 246592 15807703 ~ 15820154 (-) False znf512b
TU302753 lncRNA upstream 282480 15843591 ~ 15849718 (-) True G255772
TU302767 lncRNA upstream 320180 15881291 ~ 15881909 (-) True G255781
XM_026921257.2 mRNA downstream 14707 15412170 ~ 15451350 (-) False lmod3
XM_026920630.2 mRNA upstream 47174 15608285 ~ 15652605 (-) False uckl1b
XM_026920627.2 mRNA upstream 47174 15608285 ~ 15643942 (-) True uckl1b
XM_026920629.2 mRNA upstream 47174 15608285 ~ 15643941 (-) False uckl1b
XM_026920631.2 mRNA upstream 47174 15608285 ~ 15630237 (-) False uckl1b
XM_034311972.1 mRNA upstream 49555 15610666 ~ 15643964 (-) False uckl1b
TU301948 other downstream 761787 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 1315476 14129216 ~ 14150581 (-) False LOC113530423
TU302676 other upstream 153924 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1086712 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1252273 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2115454 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 2331970 17893081 ~ 17913277 (-) False kcng1

Expression Profile