RNA id: XM_026920474.2


Basic Information

Item Value
RNA id XM_026920474.2
length 5667
RNA type mRNA
GC content 0.48
exon number 7
gene id syde2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23888706 ~ 23921976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTGCTGCGGCTCTGCTGAACCCGGGGACGGGAGAACCGGACCGGGGCGCCGCGGAATGGCCGATCCTCTGCGGCGGACTCTGCTAGCCAAACTCCGGGGGAAGAAAGGCAAGAAAGGCTCGGTGCCGGCCGACTGGAGCAACGAAGAAGGTAAAGAGAAAGTTTTGCGTGCACGAGACGCGCACAGTCCCCGAGCGGCCGCCGCCACCGCGGAGCTGGATTACGTGCCGAGCGCGATGAGAGtACCTGTGATGGACACCCGAGACTCCTCCACTCGTCCAGTTCCTCTAAACTCCATCACAGTCTCCAAGAAGCGTAACTGGCTGAATCAGAGCTCCACGCGGCCCTCGCCACTCTCCGACGAGGATGACCACGCACACCCTCCACAAGTACGCACTCACAATCAACCACAAACTTGCACTcgaccacacactcacacaccccgTGTTCCCGCCTCCGACCCTGCTGAGGAGAACGACGCAGACGACGAGGGTGAGATCTGGTACAACCCGATTCCTGAGGACGAGGAGGTCGAGCTCCATCACGGCGAGCATGGAGCGAGAGTGCCGAGACGGACGAGCGGTGAGGAAGGGGGCAGAGCCTCTACTACTTCCAGGGATTCTGGGAACTTGAATGCCAGTCATTCCAGCGAGCAGAAACATGTGTACAGACAGATGTGCAGATCACAGGAGGAGAAACCCACAATACGGCCTACAGCTACAGaATCCCCCGAGCAAAGCGTATCAGGCTTCTCTCCCCCCTCCAGTCCGAACCCCGCTAAGAAGAGCTGCTCAATCAACTGGTCGTTCCCGGAGCGAATCAAATCTCCACGCACAGTTCGCAAACTGTCAATAAAGATGAAGAAGCTTCCCGAGCTCAGCAGGAAGCTCAGTGTTAAAGGGAACCCAACTAACGGACAGACAGAAACCAGGAACCACATGCTGAGAGCCAATGGGCCGGCTGATCTGGGCTCAGGGGGCGTGTCCACGGCATCCACAAGTGGCAACGTGATCTGGAGGTATCACTTGGACAGCAGTGTGTGCACACAGCAACAGAAAAAGAGCAGTGAATTAGGAGCTCCTAAATCGGCCATTAAGGGCGGATACTTGAGTGACGGGGACTCACCGGAACTAGTTGCCAAATCTGCTAAGCATGGCTCGTGTTCTAAATCTCACCAGAAGATGCAGGAAAAGGATTCATTTTCGAATTCTGGCGTCTCCAAACTGGCTGATGTGGCTTCTTTCCGTCCTTACAGCTTGCCAGAACAGGCAAAGTGCGCATCGTCACCACCGGTCTCAGGCCTGCTGAGTGTGCACTTGTGCGGCGCTGAGGGTCTAAAGACACCACGAAGCGACGAATCGCGCCACATCTACTGCGCTATTCAAGTCGACGAAGCAAAGCGGGCACGCACTGCGCTGCTCCCCTGCCGCGCCGACTTCCTCGCCATGGACCACACCTTCCAGCTGGAGCTGGAGGAAGCTCAGCGGCTCCGCCTCGTCCTCTTTGGTTGTGAGGCGACATCGGCGCCAAGGAGGCAGCGAGTGTGCTGCCACGGAGCAGTGGCTCTGGCGCCGCTCTTCAGGACACCGAATACCGCTCGTGTGCACCGGCTCGCCGTGCGCCTCGAGCCACGTGGAGTCATCTACGTCAAACTGGGATTGACGGAAAGGCGGCAGAGCTTGACAGAAGGGAATGAGGTGGAGAAGGAACGAGAGAGGGAGGTTTTCGGGGTGGACGCGGCACGAGTGGTGGATCGCGAGGCCACCGGGCTCATGGTGCCGCTCATCATCGAGAAGTGCATTGGCGAGATTGAGAGGAGAGGATGCCAGgtagTGGGATTGTATCGCCTGTGTGGCTCGGCTGCCGTCAAGAAGGAGCTGAGGGAGGCGTTTGAGAGGGACAGCCACGCTGTAGAGCTGTCGGAGAGCAACTACCCTGACATCAACGTCatcacagGTGTTCTTAAAGACTATCTGAGGGAGCTGCCTCATCCTCTCATCTCTAAGCCTCTGTACGAGGCGGTGCTAGACGCCATGTCCAAGCGGCCGCTGATCATCGGAAACGGCGGCTGTGAGAACGACCCGGCCGACTCGGAGCACGCCGCGGGTTTGCTCGAGACGCTGCCTGAGGTTGAGAAGATGACTCTGAGGAAACTTCTGGACCACCTGAAGCGCGTCGCATCGCATCACGAGGTGAACAAGATGACGTGTCAGAACCTGGCCGTGTGTTTCGGACCCGTGCTGCTCAGTCAGAGACAGGACGCTTCGGGTCTCGCTAACCGAGTGTTCATGGACTCGGAGGAGCTAGCCAGCGCTCTGCACTTTAAAAAGCACATCGAGGTTCTGCATTATCTGCTGCAGCTGTGGCctgTTGTGGATGTCCAGAGCAAACCCTCGTCTCCGGCCCTGGACCCGCCCGCCCCggtgaggagaagaaaagagcGCCCTCAGGTGTTAAACCTGAGCGACGCTGAGCTAGCGGGAGTTCTGCGTCCCCGTCCTGGGCGCCTGGACAGTCCAAGCAACCGCTACGCCGGAGACTGGAGCGACTGCAAGGAGACGTACCTCCATCAGATGTGTCccgaggaggaagaggaagcggACTACGCCGACGTGCCGAGCGAAGAGGAGAGGGATCAGGGCAAGGACAAAGAACGAAGGGAAGAGGATGATGAAGTGCTAGAGAGTGGAAAAGATGTACAAATAGAAGTGGAGAAGGAGCAAAAGACTGACGTTCAGGAAGACGTTAATgttggagaaaaacaaaaaattgagGACACAGCATTGCTAATGTCGTATGATCGGATGCTAGTGGAGCGAGAAGAGCACCGAGCCAAAGAGCACACCTATCAGGCGTTCATGAAGATCCAGGAGATCAGCCCTGTCCTGAGCAACAGGGTGAACCTGCGAGATCTTCAGGAGAGCATCGACGCTCTCATCGGCAACCTGGAACGAGAGCTGAACAAGAACAAGCTCAACGTCGGGTACTAATATGCTAAACACTTTACGTCAGGTTTTGGCTTTTGGTGTTTCGTCTCCATGATGAAACGTCACGATTCTGGTCTCTCAACCATCGCACTTCtcacacacaattcacacacacttacggACTTACTGACATTCCTTACGTTTAAAATATCTGACTTTCGAGGCCTCAGAGGTTTCTTCTCGGGTTCCTCGTCATCTGGTTTGGTTTGTTACATTTGTTATCGTCGCCGCTATCGTTGTTTTCTTCTTATTAGAAGAAGCCATCGAGCCCTGAGGGGTGAGCCAGGTGCCTTAATCGTGTAAAGGTGGTACTTAAGGCTGtggagaacttttttttttaataattattatttctatcgaggtacagaaaaataatgtaaaCCAATGCACTTACAAAGCCAGCTTTTAGAGGCGGGGCCAAGGATTCAGGTCATCGATATACAGTTAGATGAGTAGATCTTTACGCTAAACCTTAAACATGCCAATATTCTATAAACTACATACAACCCAAAAGCTACCTACTTCCTGTAGACACCCCTAAATTCCTGAAATACTTACACCCGAAAGGATTTAACCTACCAGTCCATAGGATTTGTAAAATCCGTAAACAGTACAACCCCCAAAACACTTTAAAAGACTTAAGCCTTACGTCCTGAAATCCCAAAATCTCTGAACTAAATCCACCTCAAGTCCCAAAACATCCTAAAAAAGTTCCCCACCATGGTACGGGGCTTAAATTAAACTTTGACCAACCAATCACAAACTTAACttttactataaatataaaataaaatattggttTTAACTTCTCAATTTATTCGCTCAGCCACATTTACTCAGCTTGCTAGCTACGGAAATGCAAACCTGTGCTTGGCGAGCTTAGCTAACGTTAGCCATATGTCTCCAGAAGTAGCTATAGGACGTACATATTGGAGTTCTCTCAAGCTAATAAACATGTGATTAACCAGTATGCATGCTAATATACaaattagctaatgttagacTAACGATTGTTGAGTAAATAAAACCAGGATTTGAGTTCTCTTGCAAGCTGGCTAATATTAGCGAAAGTATTGTGGTGATGTCATCAGCATGTTCGCCCTGAATATCATCTTATTTGCTATTCTGTAGTTTGCTTTAAATTTAATAACGGAAGCGTGTCAACCTTCCAGAATGGAAAATAAACGCTaattttgttaatgttatttaaaagtaGCATGTAGAACCTATTAGAGAATAATCGAACCGTAACTGAAGCCTGTTTTTTCTCCACTCTGCTAATTATTTTTGAATCCTACGCCTCGTTgggaaaataaacacagctgGTCGTGTGTTTGCTAACGACAGGTACGTGTGGAACACATTTTCTCCACAGTCCAGGGAAACAGTTTCGTCAGTATTTATCAGATACAAGTGTAAATATAATCGGAGTACGCTGTATTTTTTAACAGCTTACgtttccgtgtgtgtgtatttaaatgttTCTCAGCTGCCTTGTAGCATTCGggcttaaaaataataaatgtataaataaggtgatcttttttcttatttgcgTGTGCAGGACGAGTCGAAGCGACTTAAGTGGTAAGTtacgaagaagaagaaaaagtagaAGTGTGAGGTTTCGTGCACGCACTAGTTTCTTGAACGCTGCATGGTCAAAAGCTTTACAGTCCTGAATACTCGTCTGCTTCATTCgtctgtatttatgtgtgtaaatagaGATTATTTTAATGACGCTCACatggttggtttgtttgtttgtttgtttgtttgttttctgtttggcAGCTGCTCACACAGTTGTGAATTCATCTTTGTGAACTTCACTTATTGACGCTAATATGAAAACGAACGGTGTGTAATCGTGCGTTAAACCTGTTTGAAAGAAGTTTGAGAAGTTTTCAAGGTCATAGCAGAAAGGTCAATGTTCATGTTATTAATGTTTCTGACGTTGCTTTCACGTCCGTTTGACGAGTCTGAATAGGAGCGAAGTGGATTTTAGGATCCTGGGTCAGTTGATTTGCTCAAACACATAAGACAAcatgctagtgtgaacgcaggcTAATTTAGCTCAGTTAAAaccgtttcttttttttgtactgcAATGTGAACCCgatctctttttctcattcctGAAAAACTGTGAGCTGGAAACTAATGTTGTATTATGGCATTATTTTGCTGGCAAAAGTCAAAATGCAAAGGCAAATTTCCTTTTCTCTGTTTGCGCACTCAAATTTAACAAATTTTCTCAAATTCTCATCTTTCGCCAGTAAAATAACACTGTACCATTTTGTTGTTTATCGTGTGAGGCGGCTTAAAGCGCTGATCTGtgatcagatttttatttagagttCTGTCCTCTATTATACAGAGGATTAATTTTGATCCTGGGTCAGGTATTAAGGATTCACTCATAcacatggggggaaaaaagggtactggatttaatgtacagtgtgagcTGCTCATTTTATTGTGAAAACATTCCTTAATTTGTCTCTATTTCACCTTGGAAAAAATGTACGAAtgcttattttgtgttttttttttttttgtttgtttgttgtttgtttcaaTTCATTGGACAGCCCTAATATGATGAATCTGTCACTAAATCAGATATACTTTGTACTgatactgaaaaaatatatggtcataataaagtatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308080 lncRNA upstream 19150 23867651 ~ 23869556 (+) True G260217
TU308086 lncRNA upstream 26136 23861642 ~ 23862570 (+) True G260223
TU308085 lncRNA upstream 61075 23826892 ~ 23827631 (+) True G260222
TU307893 lncRNA upstream 326322 23527428 ~ 23562384 (+) True G260074
XR_004579726.1 lncRNA downstream 80575 24002549 ~ 24003381 (+) True LOC117599261
XR_004579725.1 lncRNA downstream 88701 24010675 ~ 24013004 (+) True LOC117599260
TU308299 lncRNA downstream 101402 24023376 ~ 24030335 (+) True G260410
TU308322 lncRNA downstream 209744 24131718 ~ 24131958 (+) True G260430
TU308323 lncRNA downstream 213820 24135794 ~ 24140619 (+) True G260431
XM_026920271.2 mRNA upstream 13319 23872817 ~ 23875387 (+) True c16h1orf52
XM_026920531.2 mRNA upstream 24268 23809480 ~ 23864438 (+) False ddah1
XM_034311922.1 mRNA downstream 29686 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA downstream 29687 23951661 ~ 23967886 (+) True mcoln3b
XM_026921141.2 mRNA downstream 29687 23951661 ~ 23966684 (+) False mcoln3b
XM_026920938.2 mRNA downstream 126042 24048016 ~ 24055524 (+) True gpx7
XM_026920901.2 mRNA downstream 169148 24091122 ~ 24131107 (+) True slc1a7b
TU307780 other upstream 499392 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 505053 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 505053 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1209156 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1576818 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 110253 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 346603 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 702963 24624937 ~ 24634545 (+) False ddx58

Expression Profile