RNA id: XM_026920483.2


Basic Information

Item Value
RNA id XM_026920483.2
length 4094
RNA type mRNA
GC content 0.44
exon number 3
gene id pard6b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11279829 ~ 11302003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgagtgagagagagagagagagagagagagacagggtgggCGGGGACAGGAGAGTTGAGGAACACACTGTATTGACAGCGGCTGTCTCCACTATTCCGCTTGGAGGACAACAGAAAGTGAGACGTAGGGAGGCTCGTGTTCACCTGGATTACGCGGAGAAGGAACTTCTGGCTGTCGAGTTGGAGGAGGCGGATGAGTGCAGCAGCCCCCGggggcgagtgtgtgtgtgtgtgtgagtgtgtgtgagtgctgcGGCGGGCTCCGTTTAGCGAAAGATGAACAAAAACCACCGAGTGCCGAGCAACCGATCTCTGAGCGCCGTGGAGGTGAAGAGCAAGTTTGGAGCAGAGTTCCGGCGATTCTCTCTTGACCGCTCCAAACCAGGCCGCTTCGATGAGTTCTACGGTCTTCTGCAGCATGTGCACCGTATCCCCAACGTGGAGCTGCTGGTGGGCTACGCCGACATCCATGGAGACCTGTTGCCAATTAACAATGACGACAACTACCACAAGGCTATCACCACGGCGACGCCCCTGCTCCGCCTCTTCTTGCAGAGAAAAGAGGAGGCGGACTACTCCACATTTGGCACCAACTCTTTGACGCGCAAGAAACCTCCCCTTGCTGCAGTGCTCCTGCGCCCTGATGCAGGCAGGAAGAAGCCAGCAGTAGTCATTAGCCTTCCCCGAGACTTCCGTCCCGTCTCGTCCATTATCGACGTGGACGTCTTGCCTGAGACACACCGGCGAGTGCGCCTTTACAAACACGGCCAGGAAAAGCCGCTGGGCTTCTACATCCGAGACGGCTCGAGTGTGCGTGTCACGCCGCACGGCCTGGAGAAAGCACCAGGCATCTTTATCTCACGCCTGGTGCCCGGCGGCCTTGCCGAGAGCACGGGGCTGCTTGCTGTCAATGACGAGGTGCTTGAGGTCAACGGTATCGAGGTGGCCGGGAAGTCTCTGGACCAGGTCACAGACATGATGATCGCAAACAGCCACAACCTCATCATTACGGTGAAGCCAGCTAACCAGCGCAACAACGTGGTGCGCCACAACAATGGTGGAGCTGCATCAGGCAGCTCGGGTCGATCCTCCGATAGCGGAGCCAGCTACTACAGCTACACGACCCCAGGTGCCGTGGCGACAACCCCTGCGCACATCATCCAGAACTTCCATCCTGAGGAAGTAGACAGcgatgaggatgaagaagacTTGGTGATCGAGGCAGGTGGTGATAGCAGGCTCGCGCCCGCGTCAGGGACAGAAACTAGCTCCAGCATGTCCACCCTGCCCAGATACAAGCCTCATTTTGACCTCCGAAATTCCAATGGGACCTTTGAGCCTTCTGTTATGAGCAGTACCAGCTCAGGGTCACCGAGGGGCCCCGATAGAGGTGTGCAGACGCGGAGCCTGGAAGAGGACGGCACAGTGATCACACTCTAGAGACAATAGATACACAGAGACATcaacaacagacacacacagctgacatttacacactcgatatgctgtatatatgcagtatataaaaATGATCCTAACCCCATTATCCTCACATAGGCAATTATTCACAAACACAATATATAATTTACAGACATACACCCCATCATAGGCAGCACCAACATTGTCACACCAACAGACATACACACCAACATTGTCTCTCGTGCCATAGGACTAACTCAGTGACTGTCTCTACTCTGTAAGATGACTGAATCTACTCCTTTAAAAAGAGCATCTCTTTTTTTGGAAAGGTGCTTCAGAAACTCCACAACACAGCACTTCTCTTTAAGcacagatcttttttttcctgctggaGGGCCTTCTACACGCTTCCCTCCATAACTAGGAGCACAATAATAAGTAATGGATTAGACTTGATGAGTGTGAACTTAGGGATAATTGCACATGTTTGCAGGTTTTTCCTGCCTGTGGAACTACAAAGACAGAACTCTCTGAGACACAATATCAGTGATGACAATCTGTTTTAATGCTCTCTCTGGAGTCATGTGACTCTGGGATCTGAACCACAAACAAATTTCAATGACTTTTGCGCTTCACAAATAGCACAGTAAATGCTCTACGGTTACACTGTTAATTGAGGAGGAAGCTGTATGACACTAGTTCAACTGTCATGTTTGCTTCCTGGTGTGCTTTGTCAAGTTTTTATTGAACAATGACTAAATTTAGGATGCTTCTAAATTTTTCTGTGTACAAGCAAATTAGCTTTTACCTACATTGATTGGGAGATTTACTAGGCCTGTAGTGGGCCACTGCTAATGCTTTTAATCATTGCCAAGGAcccaaaaaaatcatatttttgtagcagatattttaatttttttttaccctttatGTTTATGACAAGGGCTGTCTCCCTGCTCTGTGGCATGTGATTTATGTGATGTGTTTTTCCTTAAAGATGTAAACAACACCAGAACCTGATACATTGTTGATAACGAACATCGCAGATAACGAACACATCCACTCATTTTTACTGTACACTCTGAAGTGAAGTGTTTCATGTATGAGGAGTGTGTTAATGCCCTCTTGGATTAATACACAGTTCGGGCTATTAGATATACCATGGTTTTAAACCATCCCCACCCAACCAATAGTGGTACATAGATACAGGCTGCAGAAGGAGCACTTTTGTAACAACCTTTTTCCAGGTGACGTGCTGTGACTTGTCAGGGGATGAACTTTGAACTGAGGTCTGACCCACAGTAGATCACCATTGAGCCTTTCTGTAGTTACAACTGAAGCAATGTAGATATGAACACGGGTAGTGGTTTGTAGGCCTATGTGATGTAGGCATTGGCTGCATTATTCTTATCTAATAAAGATATGCTCCACAAAGGCACCTTCTatcatgaaaaacacacacctgtacttGTTTTCCATCCCTGACTCACCTTCTCAAATGTTGCACTGCTTGGTGCTAAGGCAAGAGTCTCCCAACATCTAGGTGGACAATAATGACTGAGTATGTTTCCTCTAATGCTTCTGACACTCTATGGCTTATGTATAAATGTCTATAAATGAGCCTACACCATAAAAAAACGATTAACCTACTACCCGGATACACTGCTTCAAGTTAACATTATTATTGCTGATACATTTGCATTAAATCTGTATGGATGGCCCTTTTGTATACTCAAAggcaatataataaaaacactaGATTTTATATTAATGGATGTACTGAATATACATCTTGAATGTGATGATATTTTGATAGACTGCTGTGCCTCATGTACTCTTAACCAGTGTTCTTGGATCTTTATCCATAGTGTAGTACATGTAGCTTTATCCTTCTCTCTTGTACTCTGATGAGAATCAAAAACACTGGATGACTGTGACCAGAACGCATTCCTATCCACTTTCTTCCCCTCATACATAGACACTTTAATACACTCGCCATTACAAAGGCTTGTTATGGTACATATACTGTAGTATGACAGGGTTGTCCTCTTATCCTAGAATTCCAAGCTGTTCTTCATTAAAACAGGCTCAAATGGCTTGTAGGAAgcattgttaattttttttttgctaaccactacactacactacgctTGGGATTGTAACCACAgtgactgtatttattttctaatcaaCTCtgattttttctctctctcttctagtGTTTAGCGTACATgtatctcttttctttcttcacagAGTATCATCTCCATAAACTGAGTTTGGggccactttttatttttattttttttaataggctTATATTTGTTATAGTGCATATATTGAAGATAACATGCTGTTTTCCATACTgtgaatttatttcatttctggaGGAGACCTGAATGAATCGGAGACCACCTACTAATgggctttttttgtgtgtgtcaactccttttgtttctttttgatAATGAGCAATGATTATTTTGCTTGCTAGATAAATCCTAAGGTATAGATTTGTACTGAAATGACCAGTATTTTCATAAtgctatatactgtaaatttgtatcacattaattaaactgtttaaaaggatatatactatattaagACATAGGTGCACATGTATACATTAGTCTACAGGCTGGATGAAATAAACTAATGTGTAGAAATGGC

Function

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299681 lncRNA upstream 32967 11245898 ~ 11246862 (+) True G253151
TU299682 lncRNA upstream 34357 11244761 ~ 11245472 (+) True G253152
TU299500 lncRNA upstream 175302 11104139 ~ 11104527 (+) True G252996
TU299459 lncRNA upstream 240398 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 280009 10998081 ~ 10999820 (+) True G252955
TU299753 lncRNA downstream 68700 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 70992 11372995 ~ 11376620 (+) True G253212
TU299761 lncRNA downstream 90431 11392434 ~ 11414634 (+) False wu:fa11c10
TU299791 lncRNA downstream 159711 11461714 ~ 11462757 (+) True G253248
TU299793 lncRNA downstream 168048 11470051 ~ 11479369 (+) False zgc:103759
XM_026920304.2 mRNA upstream 15436 11260774 ~ 11264393 (+) True ebp
XM_026920568.2 mRNA upstream 42462 11231385 ~ 11237367 (+) False oard1
XM_026920569.2 mRNA upstream 42806 11231378 ~ 11237023 (+) False oard1
XM_026921133.2 mRNA upstream 51473 11225609 ~ 11228356 (+) True guca1b
XM_026921275.2 mRNA upstream 56199 11124441 ~ 11223630 (+) False LOC113530897
XM_026920980.2 mRNA downstream 8966 11310969 ~ 11341526 (+) True arfgef2
XM_026920981.2 mRNA downstream 8966 11310969 ~ 11341526 (+) False arfgef2
XM_026920982.2 mRNA downstream 42350 11344353 ~ 11369724 (+) True bcl2l1
XM_026920983.2 mRNA downstream 43533 11345536 ~ 11369724 (+) False bcl2l1
XM_034312153.1 mRNA downstream 43533 11345536 ~ 11369724 (+) False bcl2l1
trnaf-gaa_28 other upstream 12146 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 19911 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 42467 11231429 ~ 11237362 (+) True oard1
XR_003403205.1 other upstream 283086 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 367296 10872029 ~ 10912533 (+) False atp2b3b
XR_003403199.2 other downstream 90589 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 98033 11400036 ~ 11415449 (+) False wu:fa11c10
TU299947 other downstream 590147 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 811619 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 839484 12141487 ~ 12143527 (+) False ppdpfb

Expression Profile