RNA id: XM_026920494.2


Basic Information

Item Value
RNA id XM_026920494.2
length 5399
RNA type mRNA
GC content 0.50
exon number 22
gene id atp2b3b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10872029 ~ 10913596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACAGCAGCAGCCCGCGTGGATGCTGCGTCTGAGCTCCTCAGCGCGCAGCTCAGCGAGGGGGGGCTCTCATCCCATTGCATCTAAATCCCAAATTTCGCCTCTTTTGATTTACACTTTCAAGAAGAACAACGGTGTATGTTTCTATCATCAGTAAACAAACAATCTCTGTCTTTTTGGTACGTGGTGTTCGGCGCAACTATCCTAACGCGATGTCTTCATCATTCGTATTTTCCTCTGCGGAACCTCAGCCTACCCAGGCAACGACTGCACTATTTTAGGATCCAAATTGCCATCAACACTAAAACACCCGACAGAAACCGTTTGGCTTAAAGGAGCACACGGCAGCGAGCAGTAGACAAACATCCCTACTTCACTGCGCTGCATCTTCTGAAATCTGACCCCTCCACACACCACGGCTGTGTCTTCTCAACGCTCACCCCTATTCCTTCCTTGTCTCCATCCCTGATGGATTGGGAGCGCTGTGATCCCTCGTTCTGTTGACCCTCCGGTCCAGGGGGTAGAGTGGAGCGGGCAGGTTTTAGTTATTCCTAACATTCAGAAAGCATTTTCCCCTCACTGTCCCAGTTTCCTCTTTCAATGGAGAGTTAGACGGCCAGGTGCTACTttgggagggagaggagaggggcCAAAATATCGAGCcacaccaaaaacaaaacacgtttaaaacaaaaacatcacaattTAACCTCACTCCATCCCAAGCTACTGAGACAGAGTCTCAGGGAGTTCTATAGATCTGGACAGGAAGATACGTGTGGCTTCATAAGCTGAAGAGTTGGCAATGTCAACTACAGCTACCATAGGCGACATGGCAAACAGTGCGGTGGAGTTCTATCCAAAGCGGAGTGGAGGAATGGAGGCCAACCACTCAGACAActttggggtaaccatggaggAGCTGCGGTCTCTGATGGAGCTGAGAGGAGCGGAAGCCCTGCAGAAGATTCAGGAAACCTACGGAGACACTGAGGGCCTCTGCCACAGACTCAAGTCTTCCACCACAGATGGTTTGTCTGATAACCCGGTGGATTTGGAGAAAAGAGCGCAGACATTTGGACAAAACTTCATTCCCCCTAAGAAGCCCAAGACCTTTTTGCAGCTGGTGTGGGAGGCACTGCAGGACGTCACCCTCATCATCTTGGAGATAGCAGCCATCATCTCTCTTGGCCTGTCCTTCTACCAGCCCCCGGGGGAGGAGAGTGAGGCCTGTGGGAACGTGTCAGGTGGTGCGGAGGATGAGGGTGAAGCCGAGGCGGGCTGGATTGAGGGTGCCGCTATCTTACTCTCAGTCATCTGCGTGGTGTTGGTGACAGCCTTCAACGACTGGAGCAAGGAGAAGCAGTTCCGCGGGCTGCAGAGCCGCATTGAGCAGGAGCAGCGCTTTGCTGTGGTGCGCAACGGAAATGTCATCCAGATCCCTGTGGCTGACATGGTGGTGGGCGACGTGGCCCAGGTCAAATATGGTGATCTGCTGCCTACTGACGGCATTCTGATTCAGGGCAATGATCTGAAGATTGATGAGAGCTCCCTAACCGGAGAGTCAGATCATGTACGCAAGTCAGTGGAGAAGGACCCTATGCTTCTCtctggcACCCATGTGATGGAGGGATCAGGGAGGATGTTGGTGACAGCGGTTGGAGTAAACTCTCAGTCTGGAATCATTTTCACTCTGCTAGGGgctggagagggagaggaggagaagaaagagaagaaagAAGACAGTAGTTACTCACTTACTACCGAAGCGAAACAGAGCAGCGTCACCAATGgcaAGCAGCCAGAGGCCACAGTGGAGACCAATCAAAATAAAGCCAAGAAGCAGGATGGAGCAGTCGCCATGGAAATGCAGCCACTGAAGAGCGCGGAAGGTGGAGAGGTGGAGGAGAGGGAAAAGAAGAAAGCCAACGTGCCGAAGAAGGAGAAATCCGTTCTACAGGGCAAACTTACCAAACTGGCTGTGCAGATTGGTAAAGCAGGTCTGGTAATGTCAGCTATCACAGTGATTATTTTGGTGCTCTACTTCGTGATTGAGACATTTGTGGTAGAAGGGCGGAGCTGGCTCCCCGAGTGCACACCAATCTATGTGCAGTACTTTGTCAAGTTCTTCATCATTGGAGTTACCGTGTTGGTGGTGGCTGTGCCTGAGGGTCTCCCCCTCGCTGTCACCATCTCTCTAGCTTACTCAGTGAAGaaaatgATGAAGGACAATAATCTGGTGCGCCATTTGGATGCCTGTGAGACAATGGGCAATGCCACTGCCATCTGCTCAGACAAGACTGGCACTCTGACTACCAACCGCATGACTGTGGTGCAGGCCTATGTGAACGACCAGCACTTCCGTGAGATCCCCGAACCCAATCAGATCAGCTCCAACACCCTGGAGATGATTGTCAATGCCATTTCTATCAACAGTGCTTACACCTCCAAGATCATGCCTCCTGATGTGGAAGGTGGCCTCCCTAAGCAAGTGGGGAATAAGACCGAGTGTGGTTTGCTGGGCTTTGTGCTAGACCTGAAGCGAGACTATGCACCCATCCGTGAACAGATCCCAGAGGAGAAGCTCTACAAGGTCTACACCTTCAATTCCGTCCGTAAGTCCATGAGCACCGTGGTGCAGCTTCCAGATGGCACTTTCCGTCTCTACAGCAAAGGAGCCTCTGAAATCCTCCTGAAAAAGTGTTCATCCATTATAGGAGCAGGGGGTGAAGTGCGGAGCTTCAGGCCAAGGGACCGGGACGAGATGGTGAAGAAAGTGATCGAGCCAATGGCGTGTGAGGGCCTGCGCACCATCTGTATTGCCTACCGTGACCTTCCTGGCGAGCCTGAACCTGACTGGGACAATGAGGCTGATATTGTTACTGACCTCACATGTATTGCTGTAGTTGGGATTGAGGATCCTGTGAGGCCTGAGGTCCCTGAAGCCATTCGGAAATGCCAGAGAGCAGGTATCACAGTGCGCATGGTCACTGGTGACAATATCAACACGGCACGGGCCATTGCCGCCAAATGTGGCATCATCCAGCCTGGCGATGACTTCTTGTGTCTGGAGGGCAAGGACTTCAATCGACGAATCAGGAATGAGAAAGGAGAGATTGAGCAGGAGAGGATTGATAAGATCTGGCCCAAACTGAGAGTCCTGGCTCGCTCCTCACCCACTGACAAACACACTCTGGTTAAAGGCATCATTGACAGCACTGTGATGGAGCAGAGGCAAGTAGTGGCTGTCACTGGTGATGGGACCAATGATGGACCGGCTCTTAAGAAAGCTGATGTCGGCTTTGCCATGGGCATAGCTGGAACTGATGTAGCTAAAGAGGCCTCGGATATCATCCTGACTGATGATAATTTCACTAGCATTGTGAAGGCAGTCATGTGGGGGCGAAATGTCTATGACAGCATCTCAAAATTCCTGCAGTTTCAGCTTACTGTCAATGTGGTGGCTGTTATAGTGGCCTTCACTGGAGCCTGTATTACACAGgaCTCTCCTCTGAAAGCGGTGCAGATGCTATGGGTGAACCTGATTATGGACACATTTGCGTCGCTTGCTCTGGCCACTGAGCCGCCCACTGAAGCCTTGCTATTGAGAAAACCCTATGGCCGTAACAACCCCCTCATCTCCCTCACCATGATGAAGAACATCCTGGGGCATGGTGTCTATCAGCTTGTTATCATCTTCACTCTGCTGTTTGTTGGAGAAAAGATCTTTAACATTGACAGCGGGCGCAATGCTCCACTGCACTCGCCTCCCTCAGAGCACTACACAATCATCTTCAACACCTTCGTCCTCATGCAGCTCTTCAATGAGATCAATGCTCGCAAGATCCATGGAGAGAGGAATGTGTTTGATGGCATCTTTGGCAACCCTATCTTCTGCAGCATCGTGCTGGGCACCTTCGGCGTGCAGATCGTTATAGTGCAGTTTGGGGGAAAGCCCTTTAGCTGTGCCCCTCTCAACATGGAGCAGTGGCTGTGGTGCCTCTTTGTCGGAGTTGGAGAGCTCCTGTGGGGTCAGGTCATTGCCACAGTGCCCACCAGTCACCTGAAGTGTCTGAAAGAAGCAGGTACAGGGCCAGGCACAGATGAGATGACTGAGGATGAGTTggctgaggatgaggaggagattGACCATGCTGAAAGAGAGCTGCGCAGAGGCCAGATCCTCTGGTTCAGAGGCCTCAACCGCATCCAGACTCAGATGCGGGTGGTGAAAGCGTTCCGTAGCTCCCTCTATGACGGCATCGAGAAGCCTGAGTCCAGGAACTCCATCCACAACTTCATGGCACATCCCGAGTTTCTCATCAACGACTTCATGCACAACATCCCGCTGATCGACGACACAGATATCGACGATGAGTCGGAGCTGTCCAAgcacaaccaccaccacctgCACCCGGCCTTCCGCAAGCCACCTCCTCCTCCGGTCCAGCGATCCCGCCCCCCACCGCGTCCTTATCGCCAGTACAGCCTCCCAGCTACCCCCAACCGCAACAACAATGCTAATCAGAGCAGCGTGCACCACCTGACCCAACCCACAGAACACATCGCACACTGGACCACTCATTCCCGACAGATGTGCCCCCTTCTCAGCCTGGAGACTTCACTCTGACTGCCTGCACTCCAGAGGAAGGGCACTTGATGGACTTTGGATACAGAGCAGAGACAAGATAACCATTGCTTCATTTGCATATCTGTGATATGATGGGGGAACTCCTGAGGACACAGTATTGCTCAACCTTCAACCTACAACTCACAAATAAAAGATCTACCCATTCTCTCTTACCACCACAAACCACTGTTCCAGAAAAAGTCCCATGAGTCTGTCTGGTTTTACAGTTTCACACATGCACTGCCTCCTCTCACTGTACTGAGAGGAGGTCAGTGTATTGTGCATCTGTGGTAACTGAGACCAGGACTAGGAAGGTGAGCAACacagaaatggtttattttcatgtaaaaaaaaacacagatatgTTAAGCTGTAATGATAGATATGATGCTGAGAGGAGAGGGGTGTCATGCCAAATAGGACTTTTAATGGTAAAATCATACCTGTGACTTGACTTTCCCGAGTGCAAAGGCATTACATGCAGAGTAAGAGGTcaaatcacactttttattgatgttattaacatcgttattattattattattattattattattattattattattattattattattatcatcatcataagTAGTTCTACAGTCTATCATCATCATTAGTGTTCAGATTGTCATCACTATATTTGAAAATACAACTTTTATTACAATATAACTAATGCTTTATGGAGTAgctttaacacatttatttatttatttatttatctgtttatttatttatttatttatttattgtctgctcaacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299171 lncRNA upstream 92625 10778540 ~ 10779404 (+) False si:dkey-32e6.3
TU299172 lncRNA upstream 105922 10765126 ~ 10766107 (+) True G252732
TU299154 lncRNA upstream 216004 10655807 ~ 10656025 (+) True G252720
TU299148 lncRNA upstream 243225 10624852 ~ 10628804 (+) True LOC117599292
TU299371 lncRNA downstream 31484 10945080 ~ 10946913 (+) True G252893
TU299383 lncRNA downstream 36073 10949669 ~ 10953182 (+) False G252903
TU299384 lncRNA downstream 36073 10949669 ~ 10961642 (+) True G252903
TU299445 lncRNA downstream 84485 10998081 ~ 10999820 (+) True G252955
TU299459 lncRNA downstream 124622 11038218 ~ 11039431 (+) True G252966
XM_026920138.2 mRNA upstream 6845 10857643 ~ 10865184 (+) True ccnq
XM_026920880.2 mRNA upstream 19501 10843611 ~ 10852528 (+) False b4galt3
XM_026920320.2 mRNA downstream 4679 10918275 ~ 10927209 (+) True haus7
XM_034311611.1 mRNA downstream 5601 10919197 ~ 10927209 (+) False haus7
XM_034312119.1 mRNA downstream 16651 10930247 ~ 10931966 (+) True si:dkey-93l1.9
XM_026921426.2 mRNA downstream 81281 10994877 ~ 10997433 (+) True rpl10
XM_034311874.1 mRNA downstream 91240 11004836 ~ 11006641 (+) True LOC113530834
TU299368 other upstream 20684 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 532824 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2246167 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 2513929 8352789 ~ 8358100 (+) False spen
XR_004579706.1 other upstream 2534530 8313817 ~ 8337499 (+) False atp13a2
XR_003403205.1 other downstream 83013 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 317833 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 346251 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 354015 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 478996 11392592 ~ 11415449 (+) False wu:fa11c10

Expression Profile