RNA id: XM_026920508.2


Basic Information

Item Value
RNA id XM_026920508.2
length 5198
RNA type mRNA
GC content 0.50
exon number 17
gene id hipk1a
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20754662 ~ 20773067 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCGGCCCGTGCGGCGCTTCCTGCTGTTTGGCGCTGTTTGAGAGGCTACAGAGGGCCGCTTTGCGGTGTGAAACGATGCCTCTGTGGCCGTGTTTACGCAGGAATAATGCAGATCTACTGTGTGTGTCATCCATTAAAGTCAGAGGAGATGGATTTTGCGGATAATAACGTTTTAATGAGTTATTTTGGGAAATGAGGCCTAACAGGGTGAAGAGTCGGGCTTGAGGAATTCAATGTAATCAGCTATGGCCTCCCAGCTCCAGGCATTCTCCTCCCCTTCGGTTTCCTCCAGCGGTCTTTCGCGCTCCAAGAAGCTCAAGTTGGAGAAGCCTGCATGGGACAGCGAGAGCAGTTATGGTCTGCAGAGCCCAGGACAAGCCAGCGCGTCCTCACCCTCAGCGCCAGATTTCAACTCCAACTATGGCTCTAACAGCCTCAGCTTTCCTTCCTCCAATGGTGCCCGTGAGCACACGGTTGTACGAGCTGCCGACAGCACTGGCAGCGTCCCTGgaccttcctcctcctcctcttcctcctcctcgtcctcatCGTCATCGTCAAGCCACCGGGGCAAAGACGCTTACCAAAAGCAGAGCGGTGTGAAGAGGAAGAGCGAGGAGGTGGAGAGCAGCGACAGTGTGCAGATCCTGGAAGAGCTCTCGGCCCCTGTGCTGTCCAACCGGGCCGgcggagcaggaggaggaggcacCACTACGGCACAGTCCATCACTCACTCCACTTCCACAGCTAAGAGCAGCAACTCGCACAGTGAGGGGGACTACCAGCTGGTGCAGCACGAGATCCTCTGCTCCGTCTCCAACAGCTATGAGGTGCTGGAGTTCCTCGGCCGCGGCACCTTCGGCCAGGTCGCCAAGTGCTGGAAGCGCGGCACCAACGAGATCGTGGCCATCAAGATCCTCAAAAACCATCCGTCTTACGCACGACAAGGTCAAATCGAGGTGAGCATCCTGAGCCGGTTGAGCACAGAGAACGCTGACGAGTTCAACTTTGTGCGCTCATACGAGTGCTTTCAGCACAAGAACCACACGTGCCTGGTGTTTGAGATGCTGGAGCAAAACCTGTATGACTTCCTCAAGCACAGCAAGTTCAGCCCACTGATGCTGAAGTGCATCCGGCCCGTCCTGCAGCAGGTGGCCACCGCGCTGATGAAGCTCAAGAGCCTGGGCCTGATCCATGCCGACCTCAAACCCGAGAACATCATGCTGGTGGACCCCATCAGGCAGCCGTACAGGGTCAAAGTGATCGACTTCGGCTCAGCCAGCCACGTCTCGAAGGCTGTGTGTTCCACCTACCTGCAGTCCAGATACTACCGTGCTCCTGAGATCATCCTGGGTCTGCCATTCTGCGAGGCCATCGACATGTGGTCTCTGGGCTGCGTCATTGCTGAACTCTTCCTCGGCTGGCCACTTTATCCTGGAGCCTCTGAATATGATCAGATCCGTTACATCTCTCAGACACAAGGTTTACCAGCGGAGTATCTTCTGAGTGCAGGAACAAAGACCAGCCGATTCTTCCACAGAGGACCAGACGCCAGCTACCCTCTGTGGAGGCTCAAGacGCCGGCAGAGCACGAGTCAGAGCTTGGCATCAAGTCCAAAGAGGCTCGAAAATACATCTTCAACTGTCTTGATGACATGATGCAGgttaaTATGACTAATCTAGAAGGCACAGATATTTTGGCAGAGAAGGCTGACAGGCGGGAGTTTATCGACTTGCTAAAGAAGATGCTCGCTCTTGACGCAGATAAAAGGATCACGCCGATGAAGACCCTTAACCACCCGTTTGTAACCATGACTCATCTTCTGCACTTTCCCCACAGCGCACATGTAAAGTCCTGTTTCCAAAATATGGAGATCTGTAAACGCCGATGTACTGCATTTGACAACAACAAGAACCTCTTTAGCAACAGCAGCGGGCCAAGTGCAGCCACCAACCTCACCGTGACCTTCAGCAGCCAGCTCAGTCAGCACAGTCAGATGGCGCCCTCCGGTGGCCAGTCCCTGTCTCTGAGCAGCAACGTTCCTCTGCTCAACTATCAGCCGGGTCTGTACCAGCAGGCCACCATCAACATCCCGGGTCTGACACAGCAGAGCGTCCCACTGCagaccagacacacacagctgtgcacTCAGACTGAACCCTTCCAGCAGACCCTCATCGTCTGCCCTCCCACTATACAAGCAGGGCTTCAGCCTTCCAGTAAGCACTCGGGATATCCAGTGCGGATGGACAACTCTGTCCCCATGGTCCCCCAGAACCAGTCCGCTCAGTCTCTGCACATCCAGCCCAGCATGTTGACGCAGGGCTCCTGCACACCTCTGATGGTCGCTGCCCTACACCCCCCTGCAGCAGGAGTGCCCCCTCTGTACCCACTGCCCCTGGCATTGAGCCGTTCGTCTGCGATAGCAGGGCACCTGGAGCCGAGCACAGCCATGCTGGGCTGGCCTGCGGGCACACAGCAGATCCTCATCCCGTCGGCATGGCAACAGATGCCGGGCATGGCTATCCATGGCACTGGTCAGCCCGTCCTTGCTGACTCTCCTATAGGCTCTCTGTTGGCTGATGGCTCGAGCCAGTCCAGTGCCAACTGGAGGGGGCGACATGGCGGCCAGTGTGATGTCACGCATCAGGATGCTGCACAGGGATGCCACATGACCTCGCAGACGCTCAACACAGGCGCAGCCAACAGTCGGACACAGCAGACCGGGGTTAAGAGATCAAAAGGTCGCCATGCAGAAAGCAGAGCTAGgCCCATGTCCTCTGCACTGCACACCAGCGGTGACCCTTCTCAGCCAATTATCATTTCGGACACGCCCAGCCCAGCTGTCAGCATCATCACCATTCCCAGTGACACAGAGGACGAAGATGACACCAAAGTCCCACCCACAAACTGCAGTGCGAACCAGCGGGCGAACGTCATCAGCTGTGTGACGGTGCACGATTCTCAGGACTCTGACTCGTCCACCTGCAGCCCTCTTAGTCCTAAACGCTTGCCCAACTTTGCAGAGAGCAGCGGACAAGGCTCCAAGTCTCTGGCTGTAGTGATGCCCTCTCTGAAGACTCAGACATGGGAGGGGGTGACCAGCGAACAAAGCAGCACAACATCCGGGAAGTCGAAGAAGACTTCAGCTCTGCAGTCCTCTCGCTCAGGATTGTCCAACAGTGAGCGACATCAGAGAACAGTGACCACTAAATCACAGCCTCTCAACCTGAGTCAGGTCCAGCAGCCTGTGATGTCCTCTCATGACAGGTCAGGAGGTGGATCCCTGAGACGTCAACCCACTTATCCTCCCGCGGGTCCGTCACACTCCTACAGGCTGCACGAGGCCTCGCTctttagctccgcccccaaccTGTACGCCTACCCCGCCTCGGCCGCCCTGGCCTCAGTGTCGCAGGCTGTGGATCAGCTGCACAACTCCGCCggctcttcctcctcctcttcctcctccatcaGGCACACGCGTGCTGCCGGACCTTACTCCACCTCTCTGAGTCTGCTGCAGAAGAGCAGCGCTATGGGGCTGATGGGCCAATCAGCTGCCTCGCACtgccaacagcagcagctcccCGGGCAGCCGTACCCCCTCAGCCAGAGGAAACTCAACCAGTACCCTTACCTGTGAGACACATCATCACATAGCAGAGCAACCTGATTGTGGAACTTAATTATTGTAGGTTTTcttaatcattattttaatactagttttgtttttatgtagtaatgtttattttaatgcggCTTAAGTTAAACCATTGAGTTAAGTCAGATTGTCTGATCTAATGTGTAGTTGACATCGGTTTACATTTTGTTCTCAAGATTTAATGGAAGGTGTGACTGtataaaaatgttctttagCACTATTAGTGGTGTTCAAAACATTCTCACTTTAATTTTCATCATGCTCTTATTGAACAACTGTAAGATATTATCATTAACTTTACCCCTATTTGGACAGGATTAGTTTCTCTGGGTGGCTTctataataacattttactTTTCTCCTCTAAAATAAAGCTCTTGTGTCCAGACATCAATTATATTAATACAGGAAAAGAgagtttctgttgttttatataatttagtGCTTTTAATATTGGGAACGCTATTGGATTGTttacaattatatttatttatttatttgtcagcGTCTAACGTTCGATGATTAAAGATACAACTgctcattcattattttcctagatGATTAAGTGTTCCATGATATTCTGCAAGATGTGAAtcagcagcatcatgcttttcTGATTTGTTAATTTGGGAACACACTAGATGACTAAAACAGAGAGTAGCaatgatgcaaaaaaagtgaaataataataataataaaagagtaGGTTATTATGCCATCATGGCTGATCCAGATGGAAATGAAATCACAGAGGAGCGCCTGTAAATGTAACCTAATCCCGTCCaaatatggtttttttttttttttttttttttttttttttcttttttctctttgtttttactGCCTTCATGTATTAAtcattttttactgtttatttacaggTGCCTTTGACTATATTAGCActtatgttttaatatattttcgTTATGTTGCTTTTCAATGCCAatctcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtgttcaTGGATATTGTGCTGACAGTTGCATGTTGTTTATGTAGAGTCCTAGGCGCTACATAGTCAAATGTTTTTAGGCTGCATCagcaaaatgattaaataagaaagagagaaggtcGGATGATGTATTGAAGGCTGGTGTTATGTAAGTGGTGGTGTGCAGTCAGTGATGTAGATAGCACTTAAAAAGAACGGTTAACATCGATGTGTATGCTCATAAACTTGTGCCTAGTACAATGTGTGTTTGACTCCGAGTCACAGAGCTAAGCCTGCTTTTCACAAGCTTCTTATTAGTGGACGTTTGCTCTAACTAGAAGATCGTGAATCAGTGATTTTACGCTGGTCACGTGTTCATTTAGAATAAATCAGACTTGTGCAATTGTGGATGTTTCTACTCTTCTATCAGAATGTGGAGTGTAAAGTAGACCAAATTACGGCTAAGTCCtgataaatatacatattgtatatgcacaataaacattttcagtgtATATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305785 lncRNA downstream 143603 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 161501 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 231017 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 234459 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 237949 20511166 ~ 20516713 (-) True G258189
TU305953 lncRNA upstream 3082 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 110732 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 128211 20901278 ~ 20902757 (-) True G258427
TU305993 lncRNA upstream 180559 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 200330 20973397 ~ 20976261 (-) True camk2n1b
XM_026920368.2 mRNA downstream 36642 20699123 ~ 20718020 (-) False agap2
XM_026920369.2 mRNA downstream 36643 20699123 ~ 20718019 (-) False agap2
XM_026920367.2 mRNA downstream 42551 20699123 ~ 20712111 (-) False agap2
XM_026920366.2 mRNA downstream 42551 20699123 ~ 20712111 (-) False agap2
XM_026920364.2 mRNA downstream 42551 20699123 ~ 20712111 (-) False agap2
XM_026920114.2 mRNA upstream 3835 20776902 ~ 20782760 (-) True ube2j2
XM_034312016.1 mRNA upstream 10899 20783966 ~ 20812524 (-) False acap3a
XM_034312015.1 mRNA upstream 10899 20783966 ~ 20812524 (-) False acap3a
XM_034312017.1 mRNA upstream 10899 20783966 ~ 20812524 (-) True acap3a
XM_034312018.1 mRNA upstream 10899 20783966 ~ 20800787 (-) False acap3a
TU305550 other downstream 482755 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 634713 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 645452 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 650751 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 1133102 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 57761 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 395919 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 581559 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1156108 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1672963 22446030 ~ 22449427 (-) True G259306

Expression Profile