RNA id: XM_026920527.2


Basic Information

Item Value
RNA id XM_026920527.2
length 3673
RNA type mRNA
GC content 0.44
exon number 9
gene id ccnt1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20119950 ~ 20127658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGGTGCGGTCTCTTAGACGGGGTGCCGCTAACGTGTTTCCTGTGACGCAGTACGATTTTTAAAATAGTCTCCTTCTTAGTAATGGCGGCTCCGCAAATTTCTCGCTCGGGAAAGAAGAATAAATGGTACTTTACCCGCGAGCAGATCGAAAACAGTCCATCTCGTCGAGCGGGACTTGACCCTGATAAAGAATTATCGTACAGACAACAGGCTGCTAATCTTCTACAGGACATGGGACAACGGCTCAATGTATCCCAGCTCACCATCAACACTGCCATCGCGTACATGCATCGCTTCTACATGATCCAGTCTTTCACTCGCTTCCACCGAAATGTGATTGCCCCTGCTGCCCTTTTTCTGGCAGCGAAGGTTGAAGAGCAGCCACGCAAGCTGGAGCATGTGATTAAGGTGGCCCATGCCTGTCTCAACCCTCAGGAGCCTCCTCTAGACTCTAGGAGTGACACTTACCTGCAACAATCCCAAGACCTGGTCATGCTTGAGAGCATTATACTCCAGACCCTCGCGTTTGACATCACCATTGACCATCCTCACACACATGTCGTCAAGTGTACACAGCTCGTACGAGCGAGTAAGGACCTGGCCCAGACATCATATTTTATGGCAACCAACAGTCTGCACCTGACCACGTTCTGCCTGCAGTACAGTCCACCTGTagttgcgtgtgtgtgcattcatttGGCCTGCAAGTGGTCTAACTGGGAAATACCCGTCTCTACTGACAGCAAGCACTGGTGGGAGTACGTCGACCGAAAAGTCACTCTCGAGCTGCTGGACGAGCTCACACATGAGTTTCTGCAGATCTTGGAGAAGACACCGAGCCGTTTAAAACGCATTCGAAACTGGAAAGCATCGGGTCAAACAGCGAAGAAGCCGAAGGAGGGCGACAAGACAGAGACCATGATGAATATGATCTCCATGGCATCCTCTGAAAGCACGCTAGCCGGCCTGATGAGCCTTTCAGCTCCTCCTTCAACCTCCTCGTCCTCCACCCCAACGTCATCTGCGGAGGATAAGCAGCCTGTTTTCAAAGTGCCTAACCCACCAGAACCACCTGCTCCTACGAGAGTGTCTCTGAGCGAGTATCGTGCCAAGCACGCTGACGAGCTCGCCGCACAGAAAAAGAAGCTGGAAAACATGGAGGCGTCTGTAAAGCGTGAGTACGCCACAGCCGCCCAGGCCCTCATGAACCAGCAAAGAAAGGAGAAGCACCATCAtaaccaccaccagcagcaagCTGGCTCGAGCTCCTCAGAGCCCATCGTCCTGAAGATTCCGCTAGACGAGAGGCAGGATCGTGGCTCAATCAAAATGCATCTGCCAAACAGCAGCAAAGGAGCCGAGCAGGACCTGAAATTAAAGCTCCGCATCCCAGAGAGACGATCAGGTCCAGGGGATGACGGAAAGAACAAAGAGAAGCACAGAGAGCGGTCcaaccatcatcaccaccacaatcatcaccatcaccactctTCAGGGAGTGGctcctcatcatcttcatcttcatcagcacacaaacactccaGCTCTGCGAGTGCTTCCACAAGTAGCAAAAAAGCAGACCCAACCAGAATGAGCTCATCCTCCTCGTCATCCCGAAAGCGAACTCACTCGTCCGAGCCCTCGTCTAGTGCTCACCCTTCTAAAGTCAGCAAGTCGTCCAGGAATTCGTACCAGCTGCCCCCACTGCCTACTGACATCCTGCCCTCGCTTGCGCTTTCACACAATCAGGGAAGCTACTCTCACCCCAAAACGGACAAGGCTGACACCAACGGGCACAGCGCCAGCTCAGGTGGTCAGTCTAATGAGTTCCAGGACACGTTTGACATGCTGAATTCGTTGCTGAGCGCCCAGGGGGTGCAGCCTGCGCAGCCCCAAATGTTTAACTATCACTCCCAGTACGGCGACTACAGATACGGAGCGAGCTCGAGAGGAGGCAACCCGCAACCTCCACCGCTTCCCTCGGAACCCCCTCCACGGCTTCCACCGCTCCCCGAATGAACCCCCGTCCATCACACTCTGTCCATAAACCGTCCCAGGCTTTCCAGAGTTCATCCCTCCATCGTCTCCACTTCTATCATGTGCATTAAGATTTATGAAAAATTTACGTACCACTATATATGCACATTCTGCTTCAGCCTGTTTAATCCACCCCAATCATCCTCGGTGTCCTTGTGCATGGGTGGTTCCACGGCACCTGAATGTGTGGCAATAATGGctataactataaaatataaacttttaaaacttagcaaaaaaaaaatgcaaaagcaaaatgttatttatttaaaaaaaatgtacatactaTTTTTGTCACTCAGTTTTATATATGCATTATGTCTAAATGGTGATTAATAGGAATTGTGTACCTGAGCAAGGGGGaccttttgtgttttgtggtcATCCTCTTTGAGTAACTGTTgacaaggaaaaaaagagagatttgtTTTTACGTATGggtttttaacaatttaacaattAGTGTCTCTTTTCTAAACTACAATATTTATTGatagtcttttaaaaaaaataactagaggttttttttgttttttgtttttttgctttggaagtgatttggatttatttttgtattgttttagcCCTGTTTGCATCGTGTTAATCATTTTGTGTAAgttgaagaaaacaaaaaaaagtctaacCCACACAGATTTgcatcaaaatatttaaaaaatctggtTAGTTAGTCTCTTATTTGTTCAGCCTTGTGTTCTAAGGTGGACATGCAATATTTTTCCCAtctaaaaaaactttaaatgtgttatgtttgcttttttttttcttttaaattttttttaaagaatttatggGCCCTTGGTGGAAGCAGTCATTGTTTTAAATGGTTGTAAATTGTGCTCGAAATTCAACTGAGTGTATAACATGTAGATTTCATTTTGATACCAACCCAGgcagtatcttttttttttgtttgtttgtttttgagcaGAATATAAAGATCACGTATTGGCAGAAGAGACCATAAGCCATTGTGAAGCATTTATAGACTTTTATAAACTCATAACCCATATTCAAATAATCTGCTTGAATATGTCTACCAAAGTTGTATGCAGCACAGAGGATGTAGATCATATAGAGAAATCCATCCATAACCAtgcatatcatttttttttttgtttgtttttgtttttttccagtgaaTTCTAAAAAGAGTTTCCTTTAAAAGAGTTTATGTTCAGCTTGTTTCTGAGACATGAACCGATTTCTACCATCGCATTAACGTTAATGTTGTGCCTGCCTCTGGTTAGTATATTTAATAGGATGGATTGCGATTATATCTATCCAAGCATTACACAAGCATTCATGATAAGCTCTGCATGCTAATGATGTACTGTTTAGTTTGAGAGTATTATTACCACTCATTCCTCCGAGGCTATATTCTGCCATGACTCATTACCAAAAGCATGAAGCACACGCTCCTTAACTCTCCCTACTGATTTCCTAGATGGTGCTGGAGATAAAGGggtcaagattttttttttttttttggttttcttttttttgtgtgtgttgtatcgGATTGTTGGTATCATGGGGATGTGGAAAGGTCGAATCTCAGTCTCGTGCAATcaccactgcatcttttcacGCCTgcaaagaaaagatttttttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15188 CCNT; cyclin T

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305179 lncRNA upstream 10724 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 10724 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 15910 20101008 ~ 20104040 (+) True G257802
TU305196 lncRNA upstream 20452 20099230 ~ 20099498 (+) True G257814
TU305175 lncRNA upstream 49702 20058251 ~ 20070248 (+) False LOC113530699
TU305574 lncRNA downstream 242337 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA downstream 242337 20369995 ~ 20379334 (+) False G258097
TU305640 lncRNA downstream 440132 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 483883 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 536024 20663682 ~ 20680938 (+) True G258273
XM_026921316.2 mRNA upstream 76283 20037421 ~ 20043667 (+) True sdf4
XM_026921359.2 mRNA upstream 154537 19900014 ~ 19965413 (+) True syt6a
XM_034311905.1 mRNA upstream 271288 19839711 ~ 19848662 (+) False zbtb48
XM_034311543.1 mRNA downstream 2048 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 19520 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 20994 20148652 ~ 20155096 (+) False LOC113530927
XM_026921333.2 mRNA downstream 20994 20148652 ~ 20150405 (+) False LOC113530927
XM_026921335.2 mRNA downstream 24588 20152246 ~ 20155096 (+) True LOC113530927
TU304946 other upstream 641055 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1086962 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1208236 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2999009 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3611570 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 263151 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 382586 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 775447 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 775489 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1100662 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile