RNA id: XM_026920535.2


Basic Information

Item Value
RNA id XM_026920535.2
length 7378
RNA type mRNA
GC content 0.43
exon number 11
gene id nol4lb
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12187794 ~ 12285570 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAAATGAGCTTGGAACTCTAGGTTACAGTAGACAGGgagaaattaatttattagcCTGAATTAAGCATTTCAAACCACTTTGCAGCGCACAAACTTTGCAGTTcaggtcctggagtaccccctgttctgtcctgtcctgcacatttgagggttttccctgctctagcacacccacttcaacccaggaagtgctgctgatTAGCTGCCTAATTGGTTGAGGTGCattagagcaggaaaacactACAATGCGCAAGACAAGGGAAGGCTCTAGGAGTTTTGCCATCATGGATTAATTCCAGAGCGCTCGGAATTATTCCAAGAAGCATTGCAAAAGTGCGTGGACGGAGCGGCTGGACAGGAGATCTCGTCTCTGAAGAGGGTTGCCGTGGTGGAGGATTTCTACGATATCATCTACGCCATGCATGTGGAGATCAGCTCTGACCCAGCCAAAGTGCCCAAACATGCCGGCCAGAAGAAAACATATAAAGCGATAGCAGAGACGTATGCGTTTCTGCCTAGAGAAGCAGTGACCCGTTTCCTGATGGGCTGTGGAGAGTGTCAGAAAAGGATGCACATCAGCCCAAGTGGAGCCGAGTGCAAGGAAAATGACCGGCCTGCCTCTCTGGTCCCTGACCTCATCGACTACAACATGCCTTTGACCACCACCTACCTGAAACAGATGAAACTGCAGTGCATTAACAACAACGAGCAGGATGAGAGTTCAGTGAGCAGTGAGGAGTTTGATATGAGCGACCCCACATGGATTTCAACTGAACgccataacacacactcagacctgaatccagccACTAATATAGAGAGAATGCTCagcccccaaaacacacacaaagaagacGATGATGACTCGTCCTCAGAAAGTGGGAGTGGCAACGGCATCCACAGCATGACCCCTCCGTCTATGGGTGTGGTTTCTGTGAGTGACGGTGCAGCGGCTGGACCAGTGACCGGGTCGTATAGTCAGGTTAACGGAAACAGGGCAGCTGTGCCTCTGGACTTCAGTACGACTTCATCCTCGTCCTCAGAAGAACAGCAACCAGTGAACCTGAGAGAGCGAATGAGTCAGGCCCTGCCCACTGCTGCAGCCATGCTAGCCACATTCAACCCGGAGCACTCAGAGGAGTTTCGCCGAAAATATCACAAACCGCCACTGGCCTCAGAGCTGCGCCTTGACCGAGACATCAGGGACTACGCCAACAAgtctcctCAGTATGGTTCAGGAAGCTATGACTCCATAAAAATGGAGATGTGTGCCGAGGACCTGACAGTCAGTCGCTCTCAGGCTGccgatgatgacgatgacgatCACGATGACCACGATGACAGTGACAAGATTAATGACACAGAGGGAGTGGACCCAGAGAGGCTGAAAGCATTCAATATGTTTGTGCGTCTGTTTGTTGATGAGAACCTGGACCGCATGGTGCCCATCTCCAAGCAGCCAAAAGAGAAGATACAGGCCATCATTGAATCCTGCAGCCGCCAGTTCCCAGAGTTCCAGGAGCGTGCACGCAAGCGTATCCGCACCTACCTCAAATCCTGCCGGCGCATGAAGAAGAACGGCATGGAGACCCGGCCCACGCCACCACACTTGACCTCAGCAATGGCAGAGAACATTTTAGCTGCTGCTTGTGAGAGCGAAACGAGAAACGCTGCCAAGAGGATGCGGATGGACGTCTACCAAACACATGAGGATCAGATAGCTCTGGAGAAGGCTGTCTCTCGTGAGCCAGTGCCTCTGACCCACACTGCATATTCTCTGGCAGCTTCTGCTTACTCCCAGGACCAGCTGTACATCAACGGAGGCCTTGGCTACAACTACCGTGCTTTCGCTGGCCTGGCGGGGAGCATGCAgcaccctgtctctctcactaccCCTGCTGCCCAGACCAATGGACCTACCGATCTCAGTATGAAGTCTTTGGCTTCAAACTCATCTACGTCAAGCACCAATAGTCTTGGGcggagtggaggaggaggaggagggaccTCTGCTCAGCTCAGCCATACAGAAGTGACAGCAGTGCGTCAGCTGATCGCTGGCTACCGCGAATCAGCAGCCTTCTTACTTCGCTCAGCTGATGAGCTGGAAAACCTCATACTACAACAGAACTGacctgcactctctctctctcttctcatcgccactttctgtctctctcagtttgCCTTTATCTTTAACTCTCGCTCCATCACCTCAGGTCTCTATTTGCTAGCCTCACTCTCTTTGTgccatcatcttcatcctcagaGGCGTACACACTGGAAGATCAGGAGAGATGATGAAGCATTGATCAGTATGCTGTCACATTCAGATCGCCTgcaaagagaaacaaagaaagggGGCTGATGAAGACGGGAGCATGCTGCAGTGCTGCGTTGAAGAAGAAAACACTGTTCCTGTGGGTGGCTGGCCTTGTGAATCATACACCTCTCCACCTCCATGCCCTTAAGCCCATTTACTAAAACAACtcctttaatcattttttactttataccACCTGCTTTTGAGAGCCACTAATTTGCTGATTTTTGTTCTCTTCATTTTTAATCTACTTTTTAACAGGAGGCATTATGTAGTGAAAGTACTCCTGTTTATTACTAAATGAAGACAATTTTGAGTTGAGTTGAAGGAAGATAcctgaaaaaagtgaaagtttaaaGAGAAAACggaatgaaaagaaacaaatgagaCCTTTATATTCGCTGTACATTAACGCGCTCTGTTCTAAAGCACTTTTTTTCCACTCGATCTGACCTCTCCTCCCTAACACTGCTTTTGCTGTAGGGAGAAAATTGTGTAACTTATGCATACAAATACAGGTGGAGCTCACCTGGAAATACCTCAGCCTGTCCAAATCCTCTGTGTCCCAGCTCACGTTTTCTGTCTGAGGGAGAGGAATCCCTTCTTCTACCACTACCTTATGCGTCCAGTGCCTCTCCAGGATCTAAAAGAGGGCATGCATATGGGACATGAGCTTGGTTTGTTTctatagttatttatttgatttttatttgattttatttttttttgcttctgtaatgtaatgtacataTTCAATCCATCAGAAAGTATTGATTACAGaaatacactgaaatgaaatacaCTGGAACTGGAGGATTAGACTTAATGAAGTGTTTTGATCAGGTAAAGATCTCTGCTTTAATGATTAGGTCTTTTGGGGCCTCTCAAAGCATTCCGACTATGGATGCCAACTCTATACTCCACTACCTTTCTTTTTTATGCCATTCTTCTGTAGTCACCTCTTCTTTCATGCACATGTCTGGAGCAATGGAGGGAGAGTGATGAAGGGATGGAGGAAGGATCTGTTAGTCTTTTTATCTGTTGACTTTTTCTCAAAGGCCATTAATTCCACTCTGCTGCTAAGGACTTGGACTTTTACGCCACAGACCTGAAACCTCAAGCCTCCTGCACAACCAGAGCACctcaatctgaaaaaaaaaaaaaaaaaacaaaaacgcaaAAAAGGTCCTGAAATGGACAATGGAAAAGTTTATTGATTTGAATGCTTAGAAAGAGAAAATACTGCCATACTAGTTTCCTGCATTTACATCTTGTTAGTGACCTGTATTGTCATTGAGGGTTGTGTTTGCTTTGCAGCTGCGTTTTGTTTATCTTAGACTTTAAATGCATCAGTATGTGCTTAGTTCCAGAGATTAGCAGAGATCAGCTTCTCTATCTGTGGCACGAGAGCTTTCACATGctcaaacatgcacacactctctcacataTGGAGTCTCTGGGGAACTGAATCTttagagggagagaagagaaaatgcaAGCTGTTTCAGTTAGTGAGGTAGGCTCGTGTAGGGGCTGGCTGACTGGTGTGTCACTGTAATTTGCTCCTCTTTGCACACTGAGGCAGTGCTGCTCTGCTACTGTGGAGCTCTGTGTCAAAGCTTGAGGCTGCACTGCTAGTGAGGAGCAAGAGGAAGATTATTGCAATGCAAAAGATAATCATAAGCGTTCCTGGTCCTAAAGGAGAGAGTTGGATGCGTAGAGACTACCAAGACCTGTAATGAGGGGCAGTCACAAGCACTGAAGTGAGTTTCCTTTGTCTATTCTTGTAACATTGATAATAGACACATAAAGTAAAGGAGGTAATGGAGGTATTATGTATCttcagtgaagtgtgtgtaggatCTACAAGTTTTACATTGTGCTTTCTGCCCAAGTGTAGTTATTGCAAATATGTTGTTGTAGTATCACAATATCCAGCTGGCTCAAACCACTATAAACACGGGAGAAATACTGCATGTGTTCCATTCTGTATGCTAGTCTGGGTAGATCTGCGCattttaactctctctctcagttatTGATAGTGACAAGGATGAGGAAATATGCAAAATGACCAGTCCTCTCCTCACTGTGCTCTTGTCTTACTGTGGCTGCTTGGTTTTCATTTAATATCACCTTCATTTTTATGGATCCATCTCCCTCGCTCTTTGGGGAGTGACGCTTTGATACACCCACTTTTGTTCTTCCCACTCATTTACTTTAAGGGAAGAGCTGTTTAGATGTTCTTGATTTTCCTTTGAATCAAAAAAGCCTTGCTGTGTTGCAGTTCACCATCTTGGTTTAATGTTGGTGATGTtccttttaaaaacattctCTGTGATGTTCTAGATAAGAAGACCGCTCATGAGTGATCTTTGTTCGTattgtttacttttgctttgtATTTCTCGCTCCTTTTCTGCTCAGTCCTTATGTTAAAGCACTAGAGACTGATATAAAGGCTGGGTATGAGGACTGATATCTTgctctcctctctttctgtctccatctATCCCACTTTTGCTCCCACTGGTTCGGAGTGGTGGAGGGATGGGTCCTGATGCTTATtaaaatcactcacacactgctgaatTTAGACTAACCTCACATGCCACTAAGCTCTGCTCCGGTTGCTTGAAATTTGAGATTGTGACAGTTCTACATTTGTAATATAGGCAATGGACCGCTAACATTATTTGTGGAAAGGTTGTGAGATTATTAAGGGAAATAAAAGGCACGCTCATTCACTCATCTGGGAATTTGCTCCCGCCAGCTCCCTCATGGACAGCAACTTTATGGATACAAACTGTAAAAACAAGGCAAACGACAATCTTGGAAAAGGTGTAATTAGTTTGGTTAGATTTCCCTTCTCCCTATACGGCTATTGTTTCCAGTGCGTATGGGAGAATGTGGAGTGATTTAGCCATAATCTGAGCATCTCTGATGTCTTGGACGTCTAGCCCTTTTCGCTACCTGTGGAGGACTCCTAGTGGCCCACTGTCAACACCTTCTTATatgatttctatttttattataattgtcATGattgcagttattattttttaattctttttgtaTTACAAAGTGGTCTTTCTACAACTGTTTTGTACAACACCAACATCACAAGTGAAGTTTTGTCTATACATTCCAAGGAAGGATGTCAATATATGAAGCAATCAAGTGGACCCAAGTCATCGAGCATGTACGAAGGACAGCCCACCTAAGTGCTCTatactacttaaaaaaaaacccaatcaCAAAAAAATTGCTGAAACTAGAGGCTTTCAGACAAAACAAAGTGTGCACTATGATGTACATGTACATTTCCCACAATGATCTTGGGTTACCTGGTGCGGCTTCGTTCACTTTTGACCCTACAAAGGCAAAGTGTGTTTACTTTGTAAATAAGTTGCTGACAGCACTGGTGTTAAAGGTTTTTCATGTTGGtacattttcatataaataGTATTACAACCCCAACTTTATACCTCATACTGTATCCATTATTACCCAACatggttcaaaaaaaaaaaacatgggtcagtttcagttttttttgctGAGACTGCACTTTGCCTTTGAGGAGCTGAGTTTATTGAGATTAGCACTTCATTTGTTCAGCTATAGTGGATGTCCGTTGTGAGTGTACAGATTTTAACCCCCCAGTCTGCGTATTTACGATATGAATATGCTACATTGCCTCTAGGGCCTTCaagctttgttttatttcatagctGGAATTTGGCACACACAGCCAGGTCTTATTTGATCTGTCTACATGTCATGTGACCTCTTCAAGGCACAATGACACCATCTTggcatgtacagtataaacacaagCACTCGCATATACAGATTGTGATTTGGTTCGGACCGTGTACTCTGGTTACAGTAGCTGCTGAgctacacacatttaaattggCCGGTTTGGGTCTGATGTAGAGCTCAGCAAAAATGcgaggaggaaaaaaatttttatttttctactgCAGTGGTGTACATACAGTCGAATCATCCTGATTTCCCTCCGCAGTCTGTCCTCTATAATTTGTTGGTGCtttacatttctgtttgctTTGTTCTTCTGTTTTACTGTTTCAGGAGCTTCTAAATTAAGCTCTGCTTTGGAGATTTATACCAATggaaacactctctctctctctctctctctctctctttcctcttcatTTTGGACTCAGTGGAAGTGTGATGTTTACATGTACAGATTTTTGAAATtctcagttttattttgttcttgtttgctcattgtttgttttgtttgaaagCAGTTTTTCTCCTTCCTGCTCTCATATAATGCTTAATTGAATCTGATTTCTTGTTTGTTGAAGGGAAATGGAAATGTGTCTGAGTAAGGTTTGTGTCCATTTCAGCAGTGCTTATAAAAGTGAGTCCTATTTTGCTTTGCTCTGATCCCGCTTTCAAACTGCTGACAACAGGAAGACAAAATGAAGGCTCACTGTAAAACGATCCTCTGTTCTGACTGCAAGCCAGTACACGGCAGTCCATTTCTTCGCAATTAAAAGCCATTTCCATGCCCTTCACTGGGCTCGCAACAAgtattaaattacaaaaacagactgaaaacCTCAGGTAAATGACTACTATTTATGTAATTGTAAGTCTTACTGGCAGCCCATTTCCCTCTTTAATACcacataaattatattaaataattattctttttttttatatttattgtgttcTGTATAACAGTTGAGACCTTTTTCAGTACATGTggctaaatattttaattcttttgAAAAGTGACAAATATATATGTGAAGaagatgaaagatgaaaaaatcaatttctgtttgtttaataaGAAACAGCATGGGTGACTCCTAACATATCACTTTGATTAAAGAAAaccaatgatttaaaatgatgcTTTCTCCAGTGGGTTGTCACTgctgaggttaaaaaaaaaaatgacttcagacatgacaTTGTgactttactttatttttttttcccaagctGTTTGTCTGAAAGCTAAATATGCTAATAAAATTGTGTGCTATATATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403159.2 lncRNA downstream 36849 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA downstream 36933 12143714 ~ 12150861 (-) False LOC113530483
TU300190 lncRNA downstream 283108 11904277 ~ 11904686 (-) True G253538
TU300144 lncRNA downstream 328448 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 409861 11777718 ~ 11777933 (-) True G253509
TU300547 lncRNA upstream 108651 12392363 ~ 12393653 (-) True G253843
XR_003403193.2 lncRNA upstream 322829 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 377532 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 408633 12692345 ~ 12714075 (-) True LOC117599211
TU300707 lncRNA upstream 409907 12693619 ~ 12714080 (-) False LOC117599211
XM_026920536.2 mRNA downstream 2016 12168527 ~ 12185778 (-) True zgc:194282
XM_026920538.2 mRNA downstream 19999 12155728 ~ 12167795 (-) False ptk6b
XM_026920537.2 mRNA downstream 20002 12155728 ~ 12167792 (-) True ptk6b
XM_026920760.2 mRNA downstream 100073 12083985 ~ 12087721 (-) True gid8b
XM_026920758.2 mRNA downstream 104261 12068589 ~ 12083533 (-) True slc17a9b
XM_026920136.2 mRNA upstream 22441 12306153 ~ 12316352 (-) True commd7
XM_034311983.1 mRNA upstream 111732 12395444 ~ 12400748 (-) True ube2t
XM_034311984.1 mRNA upstream 111795 12395507 ~ 12400748 (-) False ube2t
XM_026921387.2 mRNA upstream 117753 12401465 ~ 12406721 (-) False zgc:194242
XM_026921388.2 mRNA upstream 117753 12401465 ~ 12406721 (-) True zgc:194242
TU300417 other downstream 28434 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 46621 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 294792 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 295374 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 619264 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1845504 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1845504 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1845504 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1845504 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2415560 14699272 ~ 14704270 (-) False G255071

Expression Profile